SNP Detail Info-rs4758405

Organism: Homo sapiens

Alleles: G>A / G>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0491 (14692/29914,GnomAD)
G==0480 (13981/29118,TOPMED)
A=0475 (2378/5008,1000G)
A=0412 (1588/3854,ALSPAC)
A=0422 (1564/3708,TWINSUK)

Position: chr11:6303404 (GRCh38.p7) (11p15.4)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.373	A=0.627
1000Genomes	American	Sub	694	G=0.520	A=0.480
1000Genomes	East Asian	Sub	1008	G=0.570	A=0.430
1000Genomes	Europe	Sub	1006	G=0.550	A=0.450
1000Genomes	Global	Study-wide	5008	G=0.525	A=0.475
1000Genomes	South Asian	Sub	978	G=0.660	A=0.340
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.588	A=0.412
The Genome Aggregation Database	African	Sub	8706	G=0.389	A=0.611
The Genome Aggregation Database	American	Sub	836	G=0.500	A=0.500
The Genome Aggregation Database	East Asian	Sub	1616	G=0.592	A=0.408
The Genome Aggregation Database	Europe	Sub	18454	G=0.560	A=0.439
The Genome Aggregation Database	Global	Study-wide	29914	G=0.508	A=0.491
The Genome Aggregation Database	Other	Sub	302	G=0.390	A=0.610
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.480	A=0.519
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.578	A=0.422

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs4758405	8.41E-06	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs4758405