| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 13 | NC_000013.11:g.23681651A>G |
| GRCh38.p7 chr 13 | NC_000013.11:g.23681651A>T |
| GRCh37.p13 chr 13 | NC_000013.10:g.24255790A>G |
| GRCh37.p13 chr 13 | NC_000013.10:g.24255790A>T |
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| LOC105370114 transcript variant X2 | XR_001749788.1:n....XR_001749788.1:n.221T>C | T>C | Non Coding Transcript Variant |
| LOC105370114 transcript variant X2 | XR_001749788.1:n....XR_001749788.1:n.221T>A | T>A | Non Coding Transcript Variant |
| LOC105370114 transcript variant X1 | XR_941748.2:n. | N/A | Intron Variant |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.570 | G=0.430 |
| 1000Genomes | American | Sub | 694 | A=0.560 | G=0.440 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.718 | G=0.282 |
| 1000Genomes | Europe | Sub | 1006 | A=0.584 | G=0.416 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.608 | G=0.392 |
| 1000Genomes | South Asian | Sub | 978 | A=0.600 | G=0.400 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.586 | G=0.414 |
| The Genome Aggregation Database | African | Sub | 8706 | A=0.558 | G=0.442 |
| The Genome Aggregation Database | American | Sub | 838 | A=0.600 | G=0.400 |
| The Genome Aggregation Database | East Asian | Sub | 1618 | A=0.711 | G=0.289 |
| The Genome Aggregation Database | Europe | Sub | 18462 | A=0.579 | G=0.420 |
| The Genome Aggregation Database | Global | Study-wide | 29926 | A=0.578 | G=0.421 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.370 | G=0.630 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29116 | A=0.566 | G=0.433 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.580 | G=0.420 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs4769281 | 0.000611 | alcohol dependence | 21314694 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.