rs4777102

Homo sapiens
C>T
NOX5 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0296 (8859/29916,GnomAD)
T=0232 (6762/29118,TOPMED)
T=0264 (1321/5008,1000G)
T=0374 (1441/3854,ALSPAC)
T=0368 (1366/3708,TWINSUK)
chr15:68986207 (GRCh38.p7) (15q23)
AD
GWASdb2
1   publication(s)
See rs on genome
5 Enhancers around
2 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.68986207C>T
GRCh37.p13 chr 15NC_000015.9:g.69278546C>T
NOX5 RefSeqGeneNG_030464.1:g.60708C>T

Gene: NOX5, NADPH oxidase, EF-hand calcium binding domain 5(plus strand)

Molecule type Change Amino acid[Codon] SO Term
NOX5 transcript variant 3NM_001184780.1:c.N/AIntron Variant
NOX5 transcript variant 2NM_001184779.1:c.N/AGenic Upstream Transcript Variant
NOX5 transcript variant 1NM_024505.3:c.N/AGenic Upstream Transcript Variant
NOX5 transcript variant 4NR_033671.2:n.N/AIntron Variant
NOX5 transcript variant 5NR_033672.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.958T=0.042
1000GenomesAmericanSub694C=0.660T=0.340
1000GenomesEast AsianSub1008C=0.746T=0.254
1000GenomesEuropeSub1006C=0.630T=0.370
1000GenomesGlobalStudy-wide5008C=0.736T=0.264
1000GenomesSouth AsianSub978C=0.590T=0.410
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.626T=0.374
The Genome Aggregation DatabaseAfricanSub8716C=0.892T=0.108
The Genome Aggregation DatabaseAmericanSub838C=0.650T=0.350
The Genome Aggregation DatabaseEast AsianSub1618C=0.758T=0.242
The Genome Aggregation DatabaseEuropeSub18442C=0.613T=0.386
The Genome Aggregation DatabaseGlobalStudy-wide29916C=0.703T=0.296
The Genome Aggregation DatabaseOtherSub302C=0.650T=0.350
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.767T=0.232
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.632T=0.368
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs47771020.000167alcohol dependence21314694

eQTL of rs4777102 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4777102 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr156926483669264935E070-13611
chr156926493769265067E070-13479
chr156926520569265339E070-13207
chr156932465269324702E07246106
chr156924367269243749E081-34797



Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr156932363769324606E06845091
chr156932363769324606E07245091