| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 15 | NC_000015.10:g.79495493A>G |
| GRCh37.p13 chr 15 | NC_000015.9:g.79787835A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.072 | G=0.928 |
| 1000Genomes | American | Sub | 694 | A=0.170 | G=0.830 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.069 | G=0.931 |
| 1000Genomes | Europe | Sub | 1006 | A=0.210 | G=0.790 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.135 | G=0.865 |
| 1000Genomes | South Asian | Sub | 978 | A=0.190 | G=0.810 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.241 | G=0.759 |
| The Genome Aggregation Database | African | Sub | 8650 | A=0.090 | G=0.910 |
| The Genome Aggregation Database | American | Sub | 836 | A=0.140 | G=0.860 |
| The Genome Aggregation Database | East Asian | Sub | 1616 | A=0.092 | G=0.908 |
| The Genome Aggregation Database | Europe | Sub | 18328 | A=0.221 | G=0.778 |
| The Genome Aggregation Database | Global | Study-wide | 29730 | A=0.174 | G=0.825 |
| The Genome Aggregation Database | Other | Sub | 300 | A=0.240 | G=0.760 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.161 | G=0.838 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.226 | G=0.774 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs4778700 | 0.000966 | alcohol dependence | 21314694 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr15 | 79805806 | 79806045 | E070 | 17971 |
| chr15 | 79806170 | 79806224 | E070 | 18335 |
| chr15 | 79806428 | 79806536 | E070 | 18593 |
| chr15 | 79805338 | 79805712 | E081 | 17503 |
| chr15 | 79805806 | 79806045 | E081 | 17971 |
| chr15 | 79806170 | 79806224 | E081 | 18335 |
| chr15 | 79806428 | 79806536 | E081 | 18593 |
| chr15 | 79805806 | 79806045 | E082 | 17971 |
| chr15 | 79806170 | 79806224 | E082 | 18335 |
| chr15 | 79806428 | 79806536 | E082 | 18593 |