rs4782727

Homo sapiens
A>C / A>T
None
Check p-value
SNV (Single Nucleotide Variation)
C=0329 (9828/29848,GnomAD)
C=0377 (10986/29118,TOPMED)
C=0301 (1508/5008,1000G)
chr16:82267442 (GRCh38.p7) (16q23.3)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.82267442A>C
GRCh38.p7 chr 16NC_000016.10:g.82267442A>T
GRCh37.p13 chr 16NC_000016.9:g.82301047A>C
GRCh37.p13 chr 16NC_000016.9:g.82301047A>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.603C=0.397
1000GenomesAmericanSub694A=0.820C=0.180
1000GenomesEast AsianSub1008A=0.752C=0.248
1000GenomesEuropeSub1006A=0.652C=0.348
1000GenomesGlobalStudy-wide5008A=0.699C=0.301
1000GenomesSouth AsianSub978A=0.730C=0.270
The Genome Aggregation DatabaseAfricanSub8674A=0.589C=0.411
The Genome Aggregation DatabaseAmericanSub834A=0.810C=0.190
The Genome Aggregation DatabaseEast AsianSub1602A=0.734C=0.266
The Genome Aggregation DatabaseEuropeSub18436A=0.696C=0.303
The Genome Aggregation DatabaseGlobalStudy-wide29848A=0.670C=0.329
The Genome Aggregation DatabaseOtherSub302A=0.730C=0.270
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.622C=0.377
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs47827270.000322alcohol dependence20201924

eQTL of rs4782727 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4782727 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.