rs4785201

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0307 (8963/29118,TOPMED)
G=0256 (6600/25762,GnomAD)
G=0296 (1483/5008,1000G)
G=0156 (602/3854,ALSPAC)
G=0175 (650/3708,TWINSUK)
chr16:50055281 (GRCh38.p7) (16q12.1)
AD
GWASdb2
1   publication(s)
See rs on genome
31 Enhancers around
20 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.50055281A>G
GRCh37.p13 chr 16NC_000016.9:g.50089192A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.483G=0.517
1000GenomesAmericanSub694A=0.800G=0.200
1000GenomesEast AsianSub1008A=0.729G=0.271
1000GenomesEuropeSub1006A=0.827G=0.173
1000GenomesGlobalStudy-wide5008A=0.704G=0.296
1000GenomesSouth AsianSub978A=0.780G=0.220
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.844G=0.156
The Genome Aggregation DatabaseAfricanSub7964A=0.536G=0.464
The Genome Aggregation DatabaseAmericanSub422A=0.810G=0.190
The Genome Aggregation DatabaseEast AsianSub1608A=0.751G=0.249
The Genome Aggregation DatabaseEuropeSub15476A=0.846G=0.153
The Genome Aggregation DatabaseGlobalStudy-wide25762A=0.743G=0.256
The Genome Aggregation DatabaseOtherSub292A=0.810G=0.190
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.692G=0.307
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.825G=0.175
PMID Title Author Journal
19581569Genome-wide association study of alcohol dependence.Treutlein JArch Gen Psychiatry

P-Value

SNP ID p-value Traits Study
rs47852014.53E-06alcohol dependence19581569

eQTL of rs4785201 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4785201 in Fetal Brain

Probe ID Position Gene beta p-value
cg16450200chr16:50099606HEATR30.04383654515689461.7381e-9

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr165007435750074407E067-14785
chr165012754450127889E06738352
chr165012805550128164E06738863
chr165006066850060737E068-28455
chr165006104650061122E068-28070
chr165007404450074306E068-14886
chr165007435750074407E068-14785
chr165006066850060737E069-28455
chr165012754450127889E06938352
chr165005827750058330E070-30862
chr165006066850060737E071-28455
chr165006104650061122E071-28070
chr165006147550061544E071-27648
chr165012754450127889E07138352
chr165012805550128164E07138863
chr165006066850060737E072-28455
chr165006104650061122E072-28070
chr165010240950102828E07213217
chr165006066850060737E073-28455
chr165010240950102828E07313217
chr165010362450103702E07314432
chr165010371450103786E07314522
chr165012805550128164E07438863
chr165012817550128231E07438983
chr165012826250128417E07439070
chr165005827750058330E081-30862
chr165006066850060737E081-28455
chr165006104650061122E081-28070
chr165006147550061544E081-27648
chr165006199250062032E081-27160
chr165006066850060737E082-28455










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr165005838150060068E067-29124
chr165009944750100879E06710255
chr165005838150060068E068-29124
chr165009944750100879E06810255
chr165005838150060068E069-29124
chr165009944750100879E06910255
chr165005838150060068E070-29124
chr165009944750100879E07010255
chr165005838150060068E071-29124
chr165009944750100879E07110255
chr165005838150060068E072-29124
chr165009944750100879E07210255
chr165005838150060068E073-29124
chr165009944750100879E07310255
chr165005838150060068E074-29124
chr165009944750100879E07410255
chr165005838150060068E081-29124
chr165009944750100879E08110255
chr165005838150060068E082-29124
chr165009944750100879E08210255