rs4792581

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0204 (6111/29928,GnomAD)
C=0213 (6204/29118,TOPMED)
C=0142 (712/5008,1000G)
C=0208 (801/3854,ALSPAC)
C=0204 (755/3708,TWINSUK)
chr17:15163379 (GRCh38.p7) (17p12)
AD
GWASdb2
1   publication(s)
See rs on genome
13 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 17NC_000017.11:g.15163379T>C
GRCh37.p13 chr 17NC_000017.10:g.15066696T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.744C=0.256
1000GenomesAmericanSub694T=0.860C=0.140
1000GenomesEast AsianSub1008T=0.992C=0.008
1000GenomesEuropeSub1006T=0.790C=0.210
1000GenomesGlobalStudy-wide5008T=0.858C=0.142
1000GenomesSouth AsianSub978T=0.940C=0.060
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.792C=0.208
The Genome Aggregation DatabaseAfricanSub8706T=0.743C=0.257
The Genome Aggregation DatabaseAmericanSub836T=0.890C=0.110
The Genome Aggregation DatabaseEast AsianSub1614T=0.998C=0.002
The Genome Aggregation DatabaseEuropeSub18470T=0.798C=0.201
The Genome Aggregation DatabaseGlobalStudy-wide29928T=0.795C=0.204
The Genome Aggregation DatabaseOtherSub302T=0.830C=0.170
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.786C=0.213
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.796C=0.204
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs47925810.000653alcohol dependence21314694

eQTL of rs4792581 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4792581 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr171507463115075179E0677935
chr171507463115075179E0697935
chr171508331915083976E07016623
chr171508398215084063E07017286
chr171507463115075179E0717935
chr171508331915083976E07116623
chr171508398215084063E07117286
chr171507463115075179E0727935
chr171507463115075179E0747935
chr171507852615078784E08111830
chr171507883415079000E08112138
chr171508872015089290E08122024
chr171508936315089442E08122667