rs4797793

Homo sapiens
G>A
LDLRAD4 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0425 (12720/29912,GnomAD)
A=0388 (11306/29118,TOPMED)
A=0386 (1933/5008,1000G)
G==0454 (1751/3854,ALSPAC)
G==0460 (1704/3708,TWINSUK)
chr18:13638963 (GRCh38.p7) (18p11.21)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 18NC_000018.10:g.13638963G>A
GRCh37.p13 chr 18NC_000018.9:g.13638962G>A

Gene: LDLRAD4, low density lipoprotein receptor class A domain containing 4(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LDLRAD4 transcript variant c1NM_001003674.3:c.N/AIntron Variant
LDLRAD4 transcript variant c2NM_001003675.3:c.N/AIntron Variant
LDLRAD4 transcript variant d1NM_001276249.1:c.N/AIntron Variant
LDLRAD4 transcript variant a1NM_181481.4:c.N/AIntron Variant
LDLRAD4 transcript variant a2NM_181482.4:c.N/AIntron Variant
LDLRAD4 transcript variant e1NM_001276251.1:c.N/AGenic Upstream Transcript Variant
LDLRAD4 transcript variant X13XM_005258140.1:c.N/AIntron Variant
LDLRAD4 transcript variant X18XM_006722353.1:c.N/AIntron Variant
LDLRAD4 transcript variant X24XM_006722354.1:c.N/AIntron Variant
LDLRAD4 transcript variant X30XM_011525737.1:c.N/AIntron Variant
LDLRAD4 transcript variant X39XM_011525738.1:c.N/AIntron Variant
LDLRAD4 transcript variant X27XM_017025961.1:c.N/AIntron Variant
LDLRAD4 transcript variant X29XM_017025962.1:c.N/AIntron Variant
LDLRAD4 transcript variant X19XM_017025963.1:c.N/AIntron Variant
LDLRAD4 transcript variant X32XM_017025964.1:c.N/AIntron Variant
LDLRAD4 transcript variant X34XM_017025965.1:c.N/AIntron Variant
LDLRAD4 transcript variant X35XM_017025966.1:c.N/AIntron Variant
LDLRAD4 transcript variant X36XM_017025967.1:c.N/AIntron Variant
LDLRAD4 transcript variant X37XM_017025968.1:c.N/AIntron Variant
LDLRAD4 transcript variant X38XM_017025969.1:c.N/AIntron Variant
LDLRAD4 transcript variant X40XM_017025970.1:c.N/AIntron Variant
LDLRAD4 transcript variant X41XM_017025971.1:c.N/AIntron Variant
LDLRAD4 transcript variant X42XM_017025972.1:c.N/AIntron Variant
LDLRAD4 transcript variant X1XR_001753267.1:n.N/AGenic Downstream Transcript Variant
LDLRAD4 transcript variant X2XR_001753268.1:n.N/AGenic Downstream Transcript Variant
LDLRAD4 transcript variant X3XR_001753269.1:n.N/AGenic Downstream Transcript Variant
LDLRAD4 transcript variant X4XR_001753270.1:n.N/AGenic Downstream Transcript Variant
LDLRAD4 transcript variant X5XR_001753271.1:n.N/AGenic Downstream Transcript Variant
LDLRAD4 transcript variant X6XR_001753272.1:n.N/AGenic Downstream Transcript Variant
LDLRAD4 transcript variant X7XR_001753273.1:n.N/AGenic Downstream Transcript Variant
LDLRAD4 transcript variant X8XR_001753274.1:n.N/AGenic Downstream Transcript Variant
LDLRAD4 transcript variant X9XR_001753275.1:n.N/AGenic Downstream Transcript Variant
LDLRAD4 transcript variant X10XR_001753276.1:n.N/AGenic Downstream Transcript Variant
LDLRAD4 transcript variant X11XR_001753277.1:n.N/AGenic Downstream Transcript Variant
LDLRAD4 transcript variant X12XR_001753278.1:n.N/AGenic Downstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.857A=0.143
1000GenomesAmericanSub694G=0.490A=0.510
1000GenomesEast AsianSub1008G=0.666A=0.334
1000GenomesEuropeSub1006G=0.431A=0.569
1000GenomesGlobalStudy-wide5008G=0.614A=0.386
1000GenomesSouth AsianSub978G=0.510A=0.490
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.454A=0.546
The Genome Aggregation DatabaseAfricanSub8716G=0.803A=0.197
The Genome Aggregation DatabaseAmericanSub836G=0.470A=0.530
The Genome Aggregation DatabaseEast AsianSub1614G=0.661A=0.339
The Genome Aggregation DatabaseEuropeSub18444G=0.465A=0.534
The Genome Aggregation DatabaseGlobalStudy-wide29912G=0.574A=0.425
The Genome Aggregation DatabaseOtherSub302G=0.470A=0.530
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.611A=0.388
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.460A=0.540
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs47977930.000534alcohol dependence21314694

eQTL of rs4797793 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4797793 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr181359076313591162E067-47800
chr181359137513591483E067-47479
chr181359153213591591E067-47371
chr181359365513593775E067-45187
chr181360708013607164E067-31798
chr181361033613610415E067-28547
chr181361777513618047E067-20915
chr181361840613618512E067-20450
chr181361851613618635E067-20327
chr181361881013618898E067-20064
chr181361895813619017E067-19945
chr181361901813619070E067-19892
chr181361920413619272E067-19690
chr181361933713619548E067-19414
chr181361960413619934E067-19028
chr181362015113620254E067-18708
chr181362241013622450E067-16512
chr181362248513622582E067-16380
chr181362273613622845E067-16117
chr181362297313623023E067-15939
chr181362321413623264E067-15698
chr181362347113623848E067-15114
chr181362385813624144E067-14818
chr181362426213624375E067-14587
chr181362478313624934E067-14028
chr181362494113624995E067-13967
chr181362520413625254E067-13708
chr181362546413625539E067-13423
chr181362558213625721E067-13241
chr181362574013625780E067-13182
chr181362579413626182E067-12780
chr181362620013626243E067-12719
chr181362625013626323E067-12639
chr181362636013626420E067-12542
chr181362643113626530E067-12432
chr181362659813626833E067-12129
chr181362686713626917E067-12045
chr181362734913627519E067-11443
chr181362762613628062E067-10900
chr181362816613628491E067-10471
chr181362860013628723E067-10239
chr181362878113628898E067-10064
chr181362893613628986E067-9976
chr181362904413629147E067-9815
chr181362919213629242E067-9720
chr181362931213629420E067-9542
chr181362959613629711E067-9251
chr181362983913630460E067-8502
chr181363049413630589E067-8373
chr181363064513630729E067-8233
chr181363081413631075E067-7887
chr181363522913635289E067-3673
chr181363531413635364E067-3598
chr181363540113635820E067-3142
chr181363589213636068E067-2894
chr181363850113638610E067-352
chr181363881513639055E0670
chr181363912413639546E067162
chr181364039213640532E0671430
chr181364064213640692E0671680
chr181364079613640868E0671834
chr181364089013640985E0671928
chr181364107113641127E0672109
chr181364113713641290E0672175
chr181364942613649505E06710464
chr181364979813649930E06710836
chr181365115613651294E06712194
chr181365139613651469E06712434
chr181365476013654872E06715798
chr181366058613660799E06721624
chr181366082013661079E06721858
chr181368111613681376E06742154
chr181368149813681542E06742536
chr181368169513682131E06742733
chr181368838313688527E06749421
chr181368863113688843E06749669
chr181358942513589508E068-49454
chr181358977013589824E068-49138
chr181359012913590179E068-48783
chr181359025713590396E068-48566
chr181359048613590711E068-48251
chr181359076313591162E068-47800
chr181359137513591483E068-47479
chr181359153213591591E068-47371
chr181359165513591844E068-47118
chr181359193313591983E068-46979
chr181359365513593775E068-45187
chr181360521313605308E068-33654
chr181360556613605654E068-33308
chr181360568313605860E068-33102
chr181360708013607164E068-31798
chr181360989913610253E068-28709
chr181361033613610415E068-28547
chr181361600813616200E068-22762
chr181361714013617243E068-21719
chr181361765213617704E068-21258
chr181361777513618047E068-20915
chr181361840613618512E068-20450
chr181361920413619272E068-19690
chr181361933713619548E068-19414
chr181361960413619934E068-19028
chr181362015113620254E068-18708
chr181362031813620414E068-18548
chr181362075013620850E068-18112
chr181362136113621418E068-17544
chr181362158713621637E068-17325
chr181362195213622047E068-16915
chr181362241013622450E068-16512
chr181362248513622582E068-16380
chr181362273613622845E068-16117
chr181362297313623023E068-15939
chr181362321413623264E068-15698
chr181362347113623848E068-15114
chr181362385813624144E068-14818
chr181362426213624375E068-14587
chr181362478313624934E068-14028
chr181362494113624995E068-13967
chr181362520413625254E068-13708
chr181362546413625539E068-13423
chr181362558213625721E068-13241
chr181362574013625780E068-13182
chr181362579413626182E068-12780
chr181362620013626243E068-12719
chr181362625013626323E068-12639
chr181362636013626420E068-12542
chr181362643113626530E068-12432
chr181362659813626833E068-12129
chr181362686713626917E068-12045
chr181362734913627519E068-11443
chr181362816613628491E068-10471
chr181362860013628723E068-10239
chr181362878113628898E068-10064
chr181362893613628986E068-9976
chr181362904413629147E068-9815
chr181362919213629242E068-9720
chr181362931213629420E068-9542
chr181362959613629711E068-9251
chr181362983913630460E068-8502
chr181363049413630589E068-8373
chr181363064513630729E068-8233
chr181363081413631075E068-7887
chr181363371313634008E068-4954
chr181363405413634127E068-4835
chr181363522913635289E068-3673
chr181363531413635364E068-3598
chr181363540113635820E068-3142
chr181363589213636068E068-2894
chr181363624613636307E068-2655
chr181363634313636393E068-2569
chr181363681713636875E068-2087
chr181363714213637239E068-1723
chr181363850113638610E068-352
chr181363912413639546E068162
chr181364039213640532E0681430
chr181364064213640692E0681680
chr181364079613640868E0681834
chr181364089013640985E0681928
chr181364107113641127E0682109
chr181364113713641290E0682175
chr181364979813649930E06810836
chr181365115613651294E06812194
chr181365139613651469E06812434
chr181365360213653672E06814640
chr181365476013654872E06815798
chr181365488413654938E06815922
chr181365497613655064E06816014
chr181365846513658632E06819503
chr181365877413659171E06819812
chr181366014813660203E06821186
chr181366058613660799E06821624
chr181366082013661079E06821858
chr181367870213679003E06839740
chr181368149813681542E06842536
chr181368169513682131E06842733
chr181368863113688843E06849669
chr181359025713590396E069-48566
chr181359048613590711E069-48251
chr181359076313591162E069-47800
chr181359137513591483E069-47479
chr181359153213591591E069-47371
chr181359165513591844E069-47118
chr181359193313591983E069-46979
chr181360663213607046E069-31916
chr181360708013607164E069-31798
chr181361033613610415E069-28547
chr181361631713616675E069-22287
chr181361688613617079E069-21883
chr181361714013617243E069-21719
chr181361730213617352E069-21610
chr181361765213617704E069-21258
chr181361777513618047E069-20915
chr181361840613618512E069-20450
chr181361851613618635E069-20327
chr181361881013618898E069-20064
chr181361895813619017E069-19945
chr181361901813619070E069-19892
chr181361920413619272E069-19690
chr181361933713619548E069-19414
chr181361960413619934E069-19028
chr181362015113620254E069-18708
chr181362031813620414E069-18548
chr181362075013620850E069-18112
chr181362136113621418E069-17544
chr181362158713621637E069-17325
chr181362195213622047E069-16915
chr181362241013622450E069-16512
chr181362248513622582E069-16380
chr181362273613622845E069-16117
chr181362297313623023E069-15939
chr181362321413623264E069-15698
chr181362347113623848E069-15114
chr181362385813624144E069-14818
chr181362426213624375E069-14587
chr181362478313624934E069-14028
chr181362520413625254E069-13708
chr181362546413625539E069-13423
chr181362558213625721E069-13241
chr181362574013625780E069-13182
chr181362579413626182E069-12780
chr181362620013626243E069-12719
chr181362625013626323E069-12639
chr181362636013626420E069-12542
chr181362643113626530E069-12432
chr181362659813626833E069-12129
chr181362686713626917E069-12045
chr181362762613628062E069-10900
chr181362816613628491E069-10471
chr181362860013628723E069-10239
chr181362878113628898E069-10064
chr181362893613628986E069-9976
chr181362904413629147E069-9815
chr181362919213629242E069-9720
chr181362931213629420E069-9542
chr181362959613629711E069-9251
chr181362983913630460E069-8502
chr181363049413630589E069-8373
chr181363064513630729E069-8233
chr181363081413631075E069-7887
chr181363359613633661E069-5301
chr181363371313634008E069-4954
chr181363405413634127E069-4835
chr181363540113635820E069-3142
chr181363589213636068E069-2894
chr181363624613636307E069-2655
chr181363634313636393E069-2569
chr181363850113638610E069-352
chr181363881513639055E0690
chr181363912413639546E069162
chr181364039213640532E0691430
chr181364064213640692E0691680
chr181364079613640868E0691834
chr181364089013640985E0691928
chr181364107113641127E0692109
chr181364113713641290E0692175
chr181364979813649930E06910836
chr181365004013650172E06911078
chr181365018213650269E06911220
chr181365476013654872E06915798
chr181365488413654938E06915922
chr181365497613655064E06916014
chr181366058613660799E06921624
chr181366082013661079E06921858
chr181366120813661292E06922246
chr181366148113661675E06922519
chr181366170213662148E06922740
chr181367870213679003E06939740
chr181368058613680897E06941624
chr181368111613681376E06942154
chr181368149813681542E06942536
chr181368169513682131E06942733
chr181368838313688527E06949421
chr181368863113688843E06949669
chr181362478313624934E070-14028
chr181362931213629420E070-9542
chr181362959613629711E070-9251
chr181362983913630460E070-8502
chr181363714213637239E070-1723
chr181363850113638610E070-352
chr181363881513639055E0700
chr181365360213653672E07014640
chr181365379013654142E07014828
chr181365420013654393E07015238
chr181365441213654676E07015450
chr181365476013654872E07015798
chr181366009313660147E07021131
chr181366014813660203E07021186
chr181366058613660799E07021624
chr181366082013661079E07021858
chr181366120813661292E07022246
chr181366148113661675E07022519
chr181366170213662148E07022740
chr181368169513682131E07042733
chr181359025713590396E071-48566
chr181359048613590711E071-48251
chr181359076313591162E071-47800
chr181359137513591483E071-47479
chr181359153213591591E071-47371
chr181359165513591844E071-47118
chr181359193313591983E071-46979
chr181359239013592479E071-46483
chr181360485113604921E071-34041
chr181360497413605142E071-33820
chr181360521313605308E071-33654
chr181360891113609635E071-29327
chr181360969513609768E071-29194
chr181360989913610253E071-28709
chr181361033613610415E071-28547
chr181361600813616200E071-22762
chr181361688613617079E071-21883
chr181361714013617243E071-21719
chr181361730213617352E071-21610
chr181361765213617704E071-21258
chr181361777513618047E071-20915
chr181361840613618512E071-20450
chr181361851613618635E071-20327
chr181361881013618898E071-20064
chr181361895813619017E071-19945
chr181361901813619070E071-19892
chr181361920413619272E071-19690
chr181361933713619548E071-19414
chr181361960413619934E071-19028
chr181362015113620254E071-18708
chr181362031813620414E071-18548
chr181362075013620850E071-18112
chr181362136113621418E071-17544
chr181362158713621637E071-17325
chr181362195213622047E071-16915
chr181362241013622450E071-16512
chr181362248513622582E071-16380
chr181362273613622845E071-16117
chr181362297313623023E071-15939
chr181362321413623264E071-15698
chr181362347113623848E071-15114
chr181362426213624375E071-14587
chr181362478313624934E071-14028
chr181362494113624995E071-13967
chr181362520413625254E071-13708
chr181362546413625539E071-13423
chr181362558213625721E071-13241
chr181362574013625780E071-13182
chr181362579413626182E071-12780
chr181362620013626243E071-12719
chr181362625013626323E071-12639
chr181362636013626420E071-12542
chr181362643113626530E071-12432
chr181362659813626833E071-12129
chr181362686713626917E071-12045
chr181362734913627519E071-11443
chr181362762613628062E071-10900
chr181362816613628491E071-10471
chr181362860013628723E071-10239
chr181362878113628898E071-10064
chr181362893613628986E071-9976
chr181362904413629147E071-9815
chr181362919213629242E071-9720
chr181362931213629420E071-9542
chr181362959613629711E071-9251
chr181363049413630589E071-8373
chr181363064513630729E071-8233
chr181363081413631075E071-7887
chr181363522913635289E071-3673
chr181363531413635364E071-3598
chr181363540113635820E071-3142
chr181363589213636068E071-2894
chr181363624613636307E071-2655
chr181363634313636393E071-2569
chr181363681713636875E071-2087
chr181363714213637239E071-1723
chr181363850113638610E071-352
chr181363912413639546E071162
chr181364039213640532E0711430
chr181364064213640692E0711680
chr181364079613640868E0711834
chr181364089013640985E0711928
chr181364107113641127E0712109
chr181364113713641290E0712175
chr181364942613649505E07110464
chr181364979813649930E07110836
chr181365004013650172E07111078
chr181365018213650269E07111220
chr181365360213653672E07114640
chr181365379013654142E07114828
chr181365476013654872E07115798
chr181365488413654938E07115922
chr181365497613655064E07116014
chr181366058613660799E07121624
chr181366082013661079E07121858
chr181366120813661292E07122246
chr181367870213679003E07139740
chr181368058613680897E07141624
chr181368111613681376E07142154
chr181368149813681542E07142536
chr181368169513682131E07142733
chr181368838313688527E07149421
chr181368863113688843E07149669
chr181359012913590179E072-48783
chr181359025713590396E072-48566
chr181359048613590711E072-48251
chr181359076313591162E072-47800
chr181359137513591483E072-47479
chr181359153213591591E072-47371
chr181359165513591844E072-47118
chr181359193313591983E072-46979
chr181360441713604509E072-34453
chr181360485113604921E072-34041
chr181360497413605142E072-33820
chr181361688613617079E072-21883
chr181361714013617243E072-21719
chr181361730213617352E072-21610
chr181361765213617704E072-21258
chr181361777513618047E072-20915
chr181361840613618512E072-20450
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