SNP Detail Info-rs4803913

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A==0486 (14530/29848,GnomAD)
A==0482 (14059/29118,TOPMED)
A==0499 (2499/5008,1000G)
A==0490 (1888/3854,ALSPAC)
G=0492 (1824/3708,TWINSUK)

Position: chr19:46265496 (GRCh38.p7) (19q13.32)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 31 Enhancers around

Promoter: 8 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 19	NC_000019.10:g.46265496A>G
GRCh37.p13 chr 19	NC_000019.9:g.46768753A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.449	G=0.551
1000Genomes	American	Sub	694	A=0.490	G=0.510
1000Genomes	East Asian	Sub	1008	A=0.634	G=0.366
1000Genomes	Europe	Sub	1006	A=0.452	G=0.548
1000Genomes	Global	Study-wide	5008	A=0.499	G=0.501
1000Genomes	South Asian	Sub	978	A=0.480	G=0.520
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.490	G=0.510
The Genome Aggregation Database	African	Sub	8680	A=0.451	G=0.549
The Genome Aggregation Database	American	Sub	838	A=0.510	G=0.490
The Genome Aggregation Database	East Asian	Sub	1602	A=0.679	G=0.321
The Genome Aggregation Database	Europe	Sub	18428	A=0.486	G=0.513
The Genome Aggregation Database	Global	Study-wide	29848	A=0.486	G=0.513
The Genome Aggregation Database	Other	Sub	300	A=0.460	G=0.540
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.482	G=0.517
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.508	G=0.492

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs4803913	1.94E-05	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr19	46806080	46806139	E067	37327
chr19	46806191	46806241	E067	37438
chr19	46806080	46806139	E068	37327
chr19	46806191	46806241	E068	37438
chr19	46803830	46804819	E069	35077
chr19	46724429	46724558	E070	-44195
chr19	46725197	46726103	E070	-42650
chr19	46743641	46743759	E070	-24994
chr19	46743872	46744012	E070	-24741
chr19	46744056	46744254	E070	-24499
chr19	46744822	46745352	E070	-23401
chr19	46750896	46751085	E070	-17668
chr19	46803012	46803675	E070	34259
chr19	46725197	46726103	E071	-42650
chr19	46803012	46803675	E071	34259
chr19	46803830	46804819	E071	35077
chr19	46805681	46805739	E071	36928
chr19	46806080	46806139	E071	37327
chr19	46806191	46806241	E071	37438
chr19	46806318	46808027	E071	37565
chr19	46803830	46804819	E072	35077
chr19	46804974	46805074	E072	36221
chr19	46768435	46769061	E073	0
chr19	46803830	46804819	E073	35077
chr19	46725197	46726103	E074	-42650
chr19	46803012	46803675	E074	34259
chr19	46803830	46804819	E074	35077
chr19	46803012	46803675	E081	34259
chr19	46803830	46804819	E081	35077
chr19	46806318	46808027	E081	37565
chr19	46803012	46803675	E082	34259

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr19	46799835	46800886	E067	31082
chr19	46799835	46800886	E068	31082
chr19	46799835	46800886	E070	31082
chr19	46799835	46800886	E071	31082
chr19	46799835	46800886	E072	31082
chr19	46799835	46800886	E073	31082
chr19	46799835	46800886	E081	31082
chr19	46799835	46800886	E082	31082

rs4803913