rs4813301

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0220 (6607/29952,GnomAD)
A=0238 (6943/29118,TOPMED)
A=0241 (1205/5008,1000G)
A=0194 (748/3854,ALSPAC)
A=0204 (758/3708,TWINSUK)
chr20:18089684 (GRCh38.p7) (20p11.23)
AD
GWASdb2
1   publication(s)
See rs on genome
5 Enhancers around
19 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 20NC_000020.11:g.18089684G>A
GRCh37.p13 chr 20NC_000020.10:g.18070328G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.750A=0.250
1000GenomesAmericanSub694G=0.700A=0.300
1000GenomesEast AsianSub1008G=0.764A=0.236
1000GenomesEuropeSub1006G=0.793A=0.207
1000GenomesGlobalStudy-wide5008G=0.759A=0.241
1000GenomesSouth AsianSub978G=0.770A=0.230
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.806A=0.194
The Genome Aggregation DatabaseAfricanSub8722G=0.732A=0.268
The Genome Aggregation DatabaseAmericanSub838G=0.750A=0.250
The Genome Aggregation DatabaseEast AsianSub1614G=0.809A=0.191
The Genome Aggregation DatabaseEuropeSub18476G=0.801A=0.198
The Genome Aggregation DatabaseGlobalStudy-wide29952G=0.779A=0.220
The Genome Aggregation DatabaseOtherSub302G=0.690A=0.310
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.761A=0.238
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.796A=0.204
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs48133010.000147alcohol dependence21314694

eQTL of rs4813301 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4813301 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr201811731718117375E06946989
chr201803558418035646E071-34682
chr201811731718117375E07146989
chr201811731718117375E07446989
chr201808905318089455E08118725




Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr201803927018040165E067-30163
chr201811750918119413E06747181
chr201803671118038958E068-31370
chr201811750918119413E06847181
chr201803671118038958E069-31370
chr201811750918119413E06947181
chr201803671118038958E070-31370
chr201811750918119413E07047181
chr201803671118038958E071-31370
chr201811750918119413E07147181
chr201803671118038958E072-31370
chr201811750918119413E07247181
chr201803927018040165E073-30163
chr201811750918119413E07347181
chr201803671118038958E074-31370
chr201811750918119413E07447181
chr201811750918119413E08147181
chr201803671118038958E082-31370
chr201811750918119413E08247181