Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 9 | NC_000009.12:g.129751861C>T |
GRCh37.p13 chr 9 | NC_000009.11:g.132514140C>T |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
PTGES transcript | NM_004878.4:c. | N/A | Intron Variant |
PTGES transcript variant X1 | XM_011519210.2:c. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.862 | T=0.138 |
1000Genomes | American | Sub | 694 | C=0.900 | T=0.100 |
1000Genomes | East Asian | Sub | 1008 | C=0.816 | T=0.184 |
1000Genomes | Europe | Sub | 1006 | C=0.935 | T=0.065 |
1000Genomes | Global | Study-wide | 5008 | C=0.870 | T=0.130 |
1000Genomes | South Asian | Sub | 978 | C=0.850 | T=0.150 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.928 | T=0.072 |
The Genome Aggregation Database | African | Sub | 8714 | C=0.865 | T=0.135 |
The Genome Aggregation Database | American | Sub | 838 | C=0.880 | T=0.120 |
The Genome Aggregation Database | East Asian | Sub | 1616 | C=0.830 | T=0.170 |
The Genome Aggregation Database | Europe | Sub | 18450 | C=0.926 | T=0.074 |
The Genome Aggregation Database | Global | Study-wide | 29918 | C=0.901 | T=0.098 |
The Genome Aggregation Database | Other | Sub | 300 | C=0.910 | T=0.090 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.888 | T=0.111 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.921 | T=0.079 |
PMID | Title | Author | Journal |
---|---|---|---|
17158188 | Novel genes identified in a high-density genome wide association study for nicotine dependence. | Bierut LJ | Hum Mol Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs4837408 | 0.000636 | nicotine dependence | 17158188 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr9 | 132474008 | 132475874 | E067 | -38266 |
chr9 | 132488086 | 132489417 | E067 | -24723 |
chr9 | 132464704 | 132465856 | E068 | -48284 |
chr9 | 132465974 | 132466616 | E068 | -47524 |
chr9 | 132477400 | 132477527 | E068 | -36613 |
chr9 | 132499257 | 132499325 | E068 | -14815 |
chr9 | 132499397 | 132499603 | E068 | -14537 |
chr9 | 132499653 | 132499703 | E068 | -14437 |
chr9 | 132538822 | 132540233 | E068 | 24682 |
chr9 | 132476717 | 132477382 | E069 | -36758 |
chr9 | 132477400 | 132477527 | E069 | -36613 |
chr9 | 132488086 | 132489417 | E069 | -24723 |
chr9 | 132499653 | 132499703 | E069 | -14437 |
chr9 | 132538822 | 132540233 | E069 | 24682 |
chr9 | 132545974 | 132546470 | E069 | 31834 |
chr9 | 132474008 | 132475874 | E070 | -38266 |
chr9 | 132477400 | 132477527 | E070 | -36613 |
chr9 | 132487692 | 132488006 | E070 | -26134 |
chr9 | 132488086 | 132489417 | E070 | -24723 |
chr9 | 132489487 | 132489579 | E070 | -24561 |
chr9 | 132489680 | 132489756 | E070 | -24384 |
chr9 | 132464704 | 132465856 | E071 | -48284 |
chr9 | 132474008 | 132475874 | E071 | -38266 |
chr9 | 132488086 | 132489417 | E071 | -24723 |
chr9 | 132474008 | 132475874 | E072 | -38266 |
chr9 | 132488086 | 132489417 | E072 | -24723 |
chr9 | 132499257 | 132499325 | E072 | -14815 |
chr9 | 132499397 | 132499603 | E072 | -14537 |
chr9 | 132499653 | 132499703 | E072 | -14437 |
chr9 | 132538822 | 132540233 | E072 | 24682 |
chr9 | 132476717 | 132477382 | E073 | -36758 |
chr9 | 132488086 | 132489417 | E073 | -24723 |
chr9 | 132499397 | 132499603 | E073 | -14537 |
chr9 | 132499653 | 132499703 | E073 | -14437 |
chr9 | 132464704 | 132465856 | E074 | -48284 |
chr9 | 132474008 | 132475874 | E074 | -38266 |
chr9 | 132476717 | 132477382 | E074 | -36758 |
chr9 | 132477400 | 132477527 | E074 | -36613 |
chr9 | 132477984 | 132478303 | E074 | -35837 |
chr9 | 132478506 | 132478638 | E074 | -35502 |
chr9 | 132488086 | 132489417 | E074 | -24723 |
chr9 | 132538822 | 132540233 | E074 | 24682 |
chr9 | 132474008 | 132475874 | E081 | -38266 |