rs4862932

Homo sapiens
T>C
LOC107986223 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T==0332 (9949/29944,GnomAD)
T==0269 (7833/29118,TOPMED)
T==0289 (1445/5008,1000G)
T==0437 (1683/3854,ALSPAC)
T==0450 (1668/3708,TWINSUK)
chr4:32475651 (GRCh38.p7) (4p15.1)
AD
GWASdb2
1   publication(s)
See rs on genome
4 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.32475651T>C
GRCh37.p13 chr 4NC_000004.11:g.32477273T>C

Gene: LOC107986223, uncharacterized LOC107986223(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC107986223 transcriptXR_001741503.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.033C=0.967
1000GenomesAmericanSub694T=0.310C=0.690
1000GenomesEast AsianSub1008T=0.378C=0.622
1000GenomesEuropeSub1006T=0.433C=0.567
1000GenomesGlobalStudy-wide5008T=0.289C=0.711
1000GenomesSouth AsianSub978T=0.380C=0.620
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.437C=0.563
The Genome Aggregation DatabaseAfricanSub8724T=0.082C=0.918
The Genome Aggregation DatabaseAmericanSub836T=0.330C=0.670
The Genome Aggregation DatabaseEast AsianSub1622T=0.387C=0.613
The Genome Aggregation DatabaseEuropeSub18460T=0.445C=0.554
The Genome Aggregation DatabaseGlobalStudy-wide29944T=0.332C=0.667
The Genome Aggregation DatabaseOtherSub302T=0.370C=0.630
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.269C=0.731
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.450C=0.550
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs48629327.4E-05alcoholism (heaviness of drinking)21529783

eQTL of rs4862932 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4862932 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr43248758632487678E06810313
chr43247906232479563E0701789
chr43247906232479563E0811789
chr43248758632487678E08110313



Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr43252066232521051E06743389
chr43252066232521051E06843389
chr43252066232521051E06943389
chr43252066232521051E07043389
chr43252066232521051E07143389
chr43252066232521051E07243389
chr43252066232521051E07343389
chr43252066232521051E07443389
chr43252066232521051E08143389
chr43252066232521051E08243389