SNP Detail Info-rs4907992

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0186 (5585/29876,GnomAD)
G=0199 (5809/29118,TOPMED)
G=0180 (899/5008,1000G)
G=0196 (755/3854,ALSPAC)
G=0210 (779/3708,TWINSUK)

Position: chr1:103297696 (GRCh38.p7) (1p21.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.103297696A>G
GRCh37.p13 chr 1	NC_000001.10:g.103763252A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.810	G=0.190
1000Genomes	American	Sub	694	A=0.850	G=0.150
1000Genomes	East Asian	Sub	1008	A=0.817	G=0.183
1000Genomes	Europe	Sub	1006	A=0.805	G=0.195
1000Genomes	Global	Study-wide	5008	A=0.820	G=0.180
1000Genomes	South Asian	Sub	978	A=0.830	G=0.170
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.804	G=0.196
The Genome Aggregation Database	African	Sub	8712	A=0.796	G=0.204
The Genome Aggregation Database	American	Sub	832	A=0.860	G=0.140
The Genome Aggregation Database	East Asian	Sub	1614	A=0.818	G=0.182
The Genome Aggregation Database	Europe	Sub	18416	A=0.820	G=0.179
The Genome Aggregation Database	Global	Study-wide	29876	A=0.813	G=0.186
The Genome Aggregation Database	Other	Sub	302	A=0.710	G=0.290
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.800	G=0.199
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.790	G=0.210

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs4907992	0.000485	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs4907992