Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 3 | NC_000003.12:g.171113283G>A |
GRCh37.p13 chr 3 | NC_000003.11:g.170831072G>A |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
TNIK transcript variant 2 | NM_001161560.2:c. | N/A | Intron Variant |
TNIK transcript variant 3 | NM_001161561.2:c. | N/A | Intron Variant |
TNIK transcript variant 4 | NM_001161562.2:c. | N/A | Intron Variant |
TNIK transcript variant 5 | NM_001161563.2:c. | N/A | Intron Variant |
TNIK transcript variant 6 | NM_001161564.2:c. | N/A | Intron Variant |
TNIK transcript variant 7 | NM_001161565.2:c. | N/A | Intron Variant |
TNIK transcript variant 8 | NM_001161566.2:c. | N/A | Intron Variant |
TNIK transcript variant 1 | NM_015028.3:c. | N/A | Intron Variant |
TNIK transcript variant 9 | NR_027767.2:n. | N/A | Genic Downstream Transcript Variant |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
LOC105374216 transcript variant X2 | XR_001740524.1:n. | N/A | Intron Variant |
LOC105374216 transcript variant X4 | XR_001740525.1:n. | N/A | Intron Variant |
LOC105374216 transcript variant X1 | XR_001740523.1:n. | N/A | Genic Downstream Transcript Variant |
LOC105374216 transcript variant X5 | XR_001740526.1:n. | N/A | Genic Downstream Transcript Variant |
LOC105374216 transcript variant X6 | XR_001740527.1:n. | N/A | Genic Downstream Transcript Variant |
LOC105374216 transcript variant X7 | XR_001740528.1:n. | N/A | Genic Downstream Transcript Variant |
LOC105374216 transcript variant X8 | XR_001740529.1:n. | N/A | Genic Downstream Transcript Variant |
LOC105374216 transcript variant X9 | XR_001740530.1:n. | N/A | Genic Downstream Transcript Variant |
LOC105374216 transcript variant X3 | XR_924711.2:n. | N/A | Genic Downstream Transcript Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.963 | A=0.037 |
1000Genomes | American | Sub | 694 | G=0.580 | A=0.420 |
1000Genomes | East Asian | Sub | 1008 | G=0.519 | A=0.481 |
1000Genomes | Europe | Sub | 1006 | G=0.469 | A=0.531 |
1000Genomes | Global | Study-wide | 5008 | G=0.648 | A=0.352 |
1000Genomes | South Asian | Sub | 978 | G=0.580 | A=0.420 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.447 | A=0.553 |
The Genome Aggregation Database | African | Sub | 8694 | G=0.891 | A=0.109 |
The Genome Aggregation Database | American | Sub | 834 | G=0.540 | A=0.460 |
The Genome Aggregation Database | East Asian | Sub | 1616 | G=0.516 | A=0.484 |
The Genome Aggregation Database | Europe | Sub | 18362 | G=0.490 | A=0.509 |
The Genome Aggregation Database | Global | Study-wide | 29808 | G=0.609 | A=0.390 |
The Genome Aggregation Database | Other | Sub | 302 | G=0.410 | A=0.590 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.652 | A=0.347 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.456 | A=0.544 |
PMID | Title | Author | Journal |
---|---|---|---|
21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs4955765 | 0.000405 | alcohol dependence | 21314694 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr3 | 170806879 | 170807035 | E067 | -24037 |
chr3 | 170807176 | 170807512 | E067 | -23560 |
chr3 | 170807682 | 170807838 | E067 | -23234 |
chr3 | 170807853 | 170807911 | E067 | -23161 |
chr3 | 170833449 | 170833868 | E067 | 2377 |
chr3 | 170834694 | 170835076 | E067 | 3622 |
chr3 | 170840151 | 170841007 | E067 | 9079 |
chr3 | 170851084 | 170851435 | E067 | 20012 |
chr3 | 170851606 | 170851684 | E067 | 20534 |
chr3 | 170851729 | 170851921 | E067 | 20657 |
chr3 | 170852118 | 170852280 | E067 | 21046 |
chr3 | 170867450 | 170867584 | E067 | 36378 |
chr3 | 170867660 | 170867763 | E067 | 36588 |
chr3 | 170873181 | 170873522 | E067 | 42109 |
chr3 | 170874357 | 170874867 | E067 | 43285 |
chr3 | 170874970 | 170875086 | E067 | 43898 |
chr3 | 170875116 | 170875253 | E067 | 44044 |
chr3 | 170875274 | 170875437 | E067 | 44202 |
chr3 | 170875512 | 170875594 | E067 | 44440 |
chr3 | 170875850 | 170875900 | E067 | 44778 |
chr3 | 170875904 | 170876082 | E067 | 44832 |
chr3 | 170877037 | 170877328 | E067 | 45965 |
chr3 | 170877661 | 170877731 | E067 | 46589 |
chr3 | 170877770 | 170877895 | E067 | 46698 |
chr3 | 170878222 | 170878398 | E067 | 47150 |
chr3 | 170806879 | 170807035 | E068 | -24037 |
chr3 | 170807176 | 170807512 | E068 | -23560 |
chr3 | 170807682 | 170807838 | E068 | -23234 |
chr3 | 170807853 | 170807911 | E068 | -23161 |
chr3 | 170808043 | 170808103 | E068 | -22969 |
chr3 | 170833449 | 170833868 | E068 | 2377 |
chr3 | 170834083 | 170834474 | E068 | 3011 |
chr3 | 170834694 | 170835076 | E068 | 3622 |
chr3 | 170847478 | 170847708 | E068 | 16406 |
chr3 | 170847712 | 170847901 | E068 | 16640 |
chr3 | 170848112 | 170848888 | E068 | 17040 |
chr3 | 170851606 | 170851684 | E068 | 20534 |
chr3 | 170851729 | 170851921 | E068 | 20657 |
chr3 | 170852118 | 170852280 | E068 | 21046 |
chr3 | 170853243 | 170853453 | E068 | 22171 |
chr3 | 170853465 | 170853688 | E068 | 22393 |
chr3 | 170853911 | 170853971 | E068 | 22839 |
chr3 | 170854073 | 170854148 | E068 | 23001 |
chr3 | 170865824 | 170866088 | E068 | 34752 |
chr3 | 170866156 | 170866222 | E068 | 35084 |
chr3 | 170867450 | 170867584 | E068 | 36378 |
chr3 | 170867660 | 170867763 | E068 | 36588 |
chr3 | 170868226 | 170868407 | E068 | 37154 |
chr3 | 170872698 | 170872889 | E068 | 41626 |
chr3 | 170873181 | 170873522 | E068 | 42109 |
chr3 | 170874357 | 170874867 | E068 | 43285 |
chr3 | 170874970 | 170875086 | E068 | 43898 |
chr3 | 170875116 | 170875253 | E068 | 44044 |
chr3 | 170875274 | 170875437 | E068 | 44202 |
chr3 | 170875512 | 170875594 | E068 | 44440 |
chr3 | 170875850 | 170875900 | E068 | 44778 |
chr3 | 170875904 | 170876082 | E068 | 44832 |
chr3 | 170877037 | 170877328 | E068 | 45965 |
chr3 | 170877661 | 170877731 | E068 | 46589 |
chr3 | 170877770 | 170877895 | E068 | 46698 |
chr3 | 170878222 | 170878398 | E068 | 47150 |
chr3 | 170806431 | 170806635 | E069 | -24437 |
chr3 | 170806879 | 170807035 | E069 | -24037 |
chr3 | 170807176 | 170807512 | E069 | -23560 |
chr3 | 170807682 | 170807838 | E069 | -23234 |
chr3 | 170807853 | 170807911 | E069 | -23161 |
chr3 | 170808043 | 170808103 | E069 | -22969 |
chr3 | 170833449 | 170833868 | E069 | 2377 |
chr3 | 170834694 | 170835076 | E069 | 3622 |
chr3 | 170840151 | 170841007 | E069 | 9079 |
chr3 | 170847478 | 170847708 | E069 | 16406 |
chr3 | 170847712 | 170847901 | E069 | 16640 |
chr3 | 170848112 | 170848888 | E069 | 17040 |
chr3 | 170849509 | 170849549 | E069 | 18437 |
chr3 | 170867450 | 170867584 | E069 | 36378 |
chr3 | 170872698 | 170872889 | E069 | 41626 |
chr3 | 170873181 | 170873522 | E069 | 42109 |
chr3 | 170874357 | 170874867 | E069 | 43285 |
chr3 | 170874970 | 170875086 | E069 | 43898 |
chr3 | 170875116 | 170875253 | E069 | 44044 |
chr3 | 170875274 | 170875437 | E069 | 44202 |
chr3 | 170875512 | 170875594 | E069 | 44440 |
chr3 | 170875850 | 170875900 | E069 | 44778 |
chr3 | 170875904 | 170876082 | E069 | 44832 |
chr3 | 170877037 | 170877328 | E069 | 45965 |
chr3 | 170877661 | 170877731 | E069 | 46589 |
chr3 | 170877770 | 170877895 | E069 | 46698 |
chr3 | 170878222 | 170878398 | E069 | 47150 |
chr3 | 170806879 | 170807035 | E071 | -24037 |
chr3 | 170807176 | 170807512 | E071 | -23560 |
chr3 | 170807682 | 170807838 | E071 | -23234 |
chr3 | 170807853 | 170807911 | E071 | -23161 |
chr3 | 170808043 | 170808103 | E071 | -22969 |
chr3 | 170833449 | 170833868 | E071 | 2377 |
chr3 | 170834083 | 170834474 | E071 | 3011 |
chr3 | 170834694 | 170835076 | E071 | 3622 |
chr3 | 170840151 | 170841007 | E071 | 9079 |
chr3 | 170847478 | 170847708 | E071 | 16406 |
chr3 | 170847712 | 170847901 | E071 | 16640 |
chr3 | 170848112 | 170848888 | E071 | 17040 |
chr3 | 170867450 | 170867584 | E071 | 36378 |
chr3 | 170867660 | 170867763 | E071 | 36588 |
chr3 | 170872698 | 170872889 | E071 | 41626 |
chr3 | 170873181 | 170873522 | E071 | 42109 |
chr3 | 170874357 | 170874867 | E071 | 43285 |
chr3 | 170874970 | 170875086 | E071 | 43898 |
chr3 | 170875116 | 170875253 | E071 | 44044 |
chr3 | 170875274 | 170875437 | E071 | 44202 |
chr3 | 170875512 | 170875594 | E071 | 44440 |
chr3 | 170875850 | 170875900 | E071 | 44778 |
chr3 | 170875904 | 170876082 | E071 | 44832 |
chr3 | 170877037 | 170877328 | E071 | 45965 |
chr3 | 170877661 | 170877731 | E071 | 46589 |
chr3 | 170877770 | 170877895 | E071 | 46698 |
chr3 | 170878222 | 170878398 | E071 | 47150 |
chr3 | 170806879 | 170807035 | E072 | -24037 |
chr3 | 170807176 | 170807512 | E072 | -23560 |
chr3 | 170807682 | 170807838 | E072 | -23234 |
chr3 | 170807853 | 170807911 | E072 | -23161 |
chr3 | 170808043 | 170808103 | E072 | -22969 |
chr3 | 170812999 | 170813112 | E072 | -17960 |
chr3 | 170833449 | 170833868 | E072 | 2377 |
chr3 | 170834083 | 170834474 | E072 | 3011 |
chr3 | 170834694 | 170835076 | E072 | 3622 |
chr3 | 170840151 | 170841007 | E072 | 9079 |
chr3 | 170847478 | 170847708 | E072 | 16406 |
chr3 | 170847712 | 170847901 | E072 | 16640 |
chr3 | 170848112 | 170848888 | E072 | 17040 |
chr3 | 170851606 | 170851684 | E072 | 20534 |
chr3 | 170851729 | 170851921 | E072 | 20657 |
chr3 | 170867450 | 170867584 | E072 | 36378 |
chr3 | 170867660 | 170867763 | E072 | 36588 |
chr3 | 170873181 | 170873522 | E072 | 42109 |
chr3 | 170874357 | 170874867 | E072 | 43285 |
chr3 | 170874970 | 170875086 | E072 | 43898 |
chr3 | 170875116 | 170875253 | E072 | 44044 |
chr3 | 170875274 | 170875437 | E072 | 44202 |
chr3 | 170875512 | 170875594 | E072 | 44440 |
chr3 | 170875850 | 170875900 | E072 | 44778 |
chr3 | 170875904 | 170876082 | E072 | 44832 |
chr3 | 170877037 | 170877328 | E072 | 45965 |
chr3 | 170877661 | 170877731 | E072 | 46589 |
chr3 | 170877770 | 170877895 | E072 | 46698 |
chr3 | 170878222 | 170878398 | E072 | 47150 |
chr3 | 170787648 | 170787775 | E073 | -43297 |
chr3 | 170807176 | 170807512 | E073 | -23560 |
chr3 | 170833449 | 170833868 | E073 | 2377 |
chr3 | 170852118 | 170852280 | E073 | 21046 |
chr3 | 170872698 | 170872889 | E073 | 41626 |
chr3 | 170873181 | 170873522 | E073 | 42109 |
chr3 | 170874357 | 170874867 | E073 | 43285 |
chr3 | 170874970 | 170875086 | E073 | 43898 |
chr3 | 170875116 | 170875253 | E073 | 44044 |
chr3 | 170875274 | 170875437 | E073 | 44202 |
chr3 | 170875512 | 170875594 | E073 | 44440 |
chr3 | 170875850 | 170875900 | E073 | 44778 |
chr3 | 170875904 | 170876082 | E073 | 44832 |
chr3 | 170806879 | 170807035 | E074 | -24037 |
chr3 | 170807176 | 170807512 | E074 | -23560 |
chr3 | 170807682 | 170807838 | E074 | -23234 |
chr3 | 170807853 | 170807911 | E074 | -23161 |
chr3 | 170833449 | 170833868 | E074 | 2377 |
chr3 | 170834083 | 170834474 | E074 | 3011 |
chr3 | 170834694 | 170835076 | E074 | 3622 |
chr3 | 170847478 | 170847708 | E074 | 16406 |
chr3 | 170847712 | 170847901 | E074 | 16640 |
chr3 | 170872698 | 170872889 | E074 | 41626 |
chr3 | 170873181 | 170873522 | E074 | 42109 |
chr3 | 170874357 | 170874867 | E074 | 43285 |
chr3 | 170874970 | 170875086 | E074 | 43898 |
chr3 | 170875116 | 170875253 | E074 | 44044 |
chr3 | 170875274 | 170875437 | E074 | 44202 |
chr3 | 170875512 | 170875594 | E074 | 44440 |
chr3 | 170875850 | 170875900 | E074 | 44778 |
chr3 | 170875904 | 170876082 | E074 | 44832 |
chr3 | 170877037 | 170877328 | E074 | 45965 |
chr3 | 170877661 | 170877731 | E074 | 46589 |
chr3 | 170877770 | 170877895 | E074 | 46698 |
chr3 | 170878222 | 170878398 | E074 | 47150 |
chr3 | 170807176 | 170807512 | E081 | -23560 |