rs4955765

Homo sapiens
G>A
TNIK : Intron Variant
LOC105374216 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0390 (11644/29808,GnomAD)
A=0347 (10125/29118,TOPMED)
A=0352 (1765/5008,1000G)
G==0447 (1722/3854,ALSPAC)
G==0456 (1691/3708,TWINSUK)
chr3:171113283 (GRCh38.p7) (3q26.2)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.171113283G>A
GRCh37.p13 chr 3NC_000003.11:g.170831072G>A

Gene: TNIK, TRAF2 and NCK interacting kinase(minus strand)

Molecule type Change Amino acid[Codon] SO Term
TNIK transcript variant 2NM_001161560.2:c.N/AIntron Variant
TNIK transcript variant 3NM_001161561.2:c.N/AIntron Variant
TNIK transcript variant 4NM_001161562.2:c.N/AIntron Variant
TNIK transcript variant 5NM_001161563.2:c.N/AIntron Variant
TNIK transcript variant 6NM_001161564.2:c.N/AIntron Variant
TNIK transcript variant 7NM_001161565.2:c.N/AIntron Variant
TNIK transcript variant 8NM_001161566.2:c.N/AIntron Variant
TNIK transcript variant 1NM_015028.3:c.N/AIntron Variant
TNIK transcript variant 9NR_027767.2:n.N/AGenic Downstream Transcript Variant

Gene: LOC105374216, uncharacterized LOC105374216(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC105374216 transcript variant X2XR_001740524.1:n.N/AIntron Variant
LOC105374216 transcript variant X4XR_001740525.1:n.N/AIntron Variant
LOC105374216 transcript variant X1XR_001740523.1:n.N/AGenic Downstream Transcript Variant
LOC105374216 transcript variant X5XR_001740526.1:n.N/AGenic Downstream Transcript Variant
LOC105374216 transcript variant X6XR_001740527.1:n.N/AGenic Downstream Transcript Variant
LOC105374216 transcript variant X7XR_001740528.1:n.N/AGenic Downstream Transcript Variant
LOC105374216 transcript variant X8XR_001740529.1:n.N/AGenic Downstream Transcript Variant
LOC105374216 transcript variant X9XR_001740530.1:n.N/AGenic Downstream Transcript Variant
LOC105374216 transcript variant X3XR_924711.2:n.N/AGenic Downstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.963A=0.037
1000GenomesAmericanSub694G=0.580A=0.420
1000GenomesEast AsianSub1008G=0.519A=0.481
1000GenomesEuropeSub1006G=0.469A=0.531
1000GenomesGlobalStudy-wide5008G=0.648A=0.352
1000GenomesSouth AsianSub978G=0.580A=0.420
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.447A=0.553
The Genome Aggregation DatabaseAfricanSub8694G=0.891A=0.109
The Genome Aggregation DatabaseAmericanSub834G=0.540A=0.460
The Genome Aggregation DatabaseEast AsianSub1616G=0.516A=0.484
The Genome Aggregation DatabaseEuropeSub18362G=0.490A=0.509
The Genome Aggregation DatabaseGlobalStudy-wide29808G=0.609A=0.390
The Genome Aggregation DatabaseOtherSub302G=0.410A=0.590
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.652A=0.347
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.456A=0.544
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs49557650.000405alcohol dependence21314694

eQTL of rs4955765 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4955765 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr3170806879170807035E067-24037
chr3170807176170807512E067-23560
chr3170807682170807838E067-23234
chr3170807853170807911E067-23161
chr3170833449170833868E0672377
chr3170834694170835076E0673622
chr3170840151170841007E0679079
chr3170851084170851435E06720012
chr3170851606170851684E06720534
chr3170851729170851921E06720657
chr3170852118170852280E06721046
chr3170867450170867584E06736378
chr3170867660170867763E06736588
chr3170873181170873522E06742109
chr3170874357170874867E06743285
chr3170874970170875086E06743898
chr3170875116170875253E06744044
chr3170875274170875437E06744202
chr3170875512170875594E06744440
chr3170875850170875900E06744778
chr3170875904170876082E06744832
chr3170877037170877328E06745965
chr3170877661170877731E06746589
chr3170877770170877895E06746698
chr3170878222170878398E06747150
chr3170806879170807035E068-24037
chr3170807176170807512E068-23560
chr3170807682170807838E068-23234
chr3170807853170807911E068-23161
chr3170808043170808103E068-22969
chr3170833449170833868E0682377
chr3170834083170834474E0683011
chr3170834694170835076E0683622
chr3170847478170847708E06816406
chr3170847712170847901E06816640
chr3170848112170848888E06817040
chr3170851606170851684E06820534
chr3170851729170851921E06820657
chr3170852118170852280E06821046
chr3170853243170853453E06822171
chr3170853465170853688E06822393
chr3170853911170853971E06822839
chr3170854073170854148E06823001
chr3170865824170866088E06834752
chr3170866156170866222E06835084
chr3170867450170867584E06836378
chr3170867660170867763E06836588
chr3170868226170868407E06837154
chr3170872698170872889E06841626
chr3170873181170873522E06842109
chr3170874357170874867E06843285
chr3170874970170875086E06843898
chr3170875116170875253E06844044
chr3170875274170875437E06844202
chr3170875512170875594E06844440
chr3170875850170875900E06844778
chr3170875904170876082E06844832
chr3170877037170877328E06845965
chr3170877661170877731E06846589
chr3170877770170877895E06846698
chr3170878222170878398E06847150
chr3170806431170806635E069-24437
chr3170806879170807035E069-24037
chr3170807176170807512E069-23560
chr3170807682170807838E069-23234
chr3170807853170807911E069-23161
chr3170808043170808103E069-22969
chr3170833449170833868E0692377
chr3170834694170835076E0693622
chr3170840151170841007E0699079
chr3170847478170847708E06916406
chr3170847712170847901E06916640
chr3170848112170848888E06917040
chr3170849509170849549E06918437
chr3170867450170867584E06936378
chr3170872698170872889E06941626
chr3170873181170873522E06942109
chr3170874357170874867E06943285
chr3170874970170875086E06943898
chr3170875116170875253E06944044
chr3170875274170875437E06944202
chr3170875512170875594E06944440
chr3170875850170875900E06944778
chr3170875904170876082E06944832
chr3170877037170877328E06945965
chr3170877661170877731E06946589
chr3170877770170877895E06946698
chr3170878222170878398E06947150
chr3170806879170807035E071-24037
chr3170807176170807512E071-23560
chr3170807682170807838E071-23234
chr3170807853170807911E071-23161
chr3170808043170808103E071-22969
chr3170833449170833868E0712377
chr3170834083170834474E0713011
chr3170834694170835076E0713622
chr3170840151170841007E0719079
chr3170847478170847708E07116406
chr3170847712170847901E07116640
chr3170848112170848888E07117040
chr3170867450170867584E07136378
chr3170867660170867763E07136588
chr3170872698170872889E07141626
chr3170873181170873522E07142109
chr3170874357170874867E07143285
chr3170874970170875086E07143898
chr3170875116170875253E07144044
chr3170875274170875437E07144202
chr3170875512170875594E07144440
chr3170875850170875900E07144778
chr3170875904170876082E07144832
chr3170877037170877328E07145965
chr3170877661170877731E07146589
chr3170877770170877895E07146698
chr3170878222170878398E07147150
chr3170806879170807035E072-24037
chr3170807176170807512E072-23560
chr3170807682170807838E072-23234
chr3170807853170807911E072-23161
chr3170808043170808103E072-22969
chr3170812999170813112E072-17960
chr3170833449170833868E0722377
chr3170834083170834474E0723011
chr3170834694170835076E0723622
chr3170840151170841007E0729079
chr3170847478170847708E07216406
chr3170847712170847901E07216640
chr3170848112170848888E07217040
chr3170851606170851684E07220534
chr3170851729170851921E07220657
chr3170867450170867584E07236378
chr3170867660170867763E07236588
chr3170873181170873522E07242109
chr3170874357170874867E07243285
chr3170874970170875086E07243898
chr3170875116170875253E07244044
chr3170875274170875437E07244202
chr3170875512170875594E07244440
chr3170875850170875900E07244778
chr3170875904170876082E07244832
chr3170877037170877328E07245965
chr3170877661170877731E07246589
chr3170877770170877895E07246698
chr3170878222170878398E07247150
chr3170787648170787775E073-43297
chr3170807176170807512E073-23560
chr3170833449170833868E0732377
chr3170852118170852280E07321046
chr3170872698170872889E07341626
chr3170873181170873522E07342109
chr3170874357170874867E07343285
chr3170874970170875086E07343898
chr3170875116170875253E07344044
chr3170875274170875437E07344202
chr3170875512170875594E07344440
chr3170875850170875900E07344778
chr3170875904170876082E07344832
chr3170806879170807035E074-24037
chr3170807176170807512E074-23560
chr3170807682170807838E074-23234
chr3170807853170807911E074-23161
chr3170833449170833868E0742377
chr3170834083170834474E0743011
chr3170834694170835076E0743622
chr3170847478170847708E07416406
chr3170847712170847901E07416640
chr3170872698170872889E07441626
chr3170873181170873522E07442109
chr3170874357170874867E07443285
chr3170874970170875086E07443898
chr3170875116170875253E07444044
chr3170875274170875437E07444202
chr3170875512170875594E07444440
chr3170875850170875900E07444778
chr3170875904170876082E07444832
chr3170877037170877328E07445965
chr3170877661170877731E07446589
chr3170877770170877895E07446698
chr3170878222170878398E07447150
chr3170807176170807512E081-23560