Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 17 | NC_000017.11:g.73134434C>T |
GRCh37.p13 chr 17 | NC_000017.10:g.71130573C>T |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.150 | T=0.850 |
1000Genomes | American | Sub | 694 | C=0.110 | T=0.890 |
1000Genomes | East Asian | Sub | 1008 | C=0.089 | T=0.911 |
1000Genomes | Europe | Sub | 1006 | C=0.036 | T=0.964 |
1000Genomes | Global | Study-wide | 5008 | C=0.088 | T=0.912 |
1000Genomes | South Asian | Sub | 978 | C=0.040 | T=0.960 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.038 | T=0.962 |
The Genome Aggregation Database | African | Sub | 8714 | C=0.132 | T=0.868 |
The Genome Aggregation Database | American | Sub | 838 | C=0.120 | T=0.880 |
The Genome Aggregation Database | East Asian | Sub | 1618 | C=0.091 | T=0.909 |
The Genome Aggregation Database | Europe | Sub | 18494 | C=0.040 | T=0.959 |
The Genome Aggregation Database | Global | Study-wide | 29966 | C=0.072 | T=0.927 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.090 | T=0.910 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.086 | T=0.913 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.039 | T=0.961 |
PMID | Title | Author | Journal |
---|---|---|---|
21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs4969069 | 0.000893 | alcohol dependence | 21314694 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr17 | 71084827 | 71084877 | E067 | -45696 |
chr17 | 71084979 | 71085127 | E067 | -45446 |
chr17 | 71085164 | 71085214 | E067 | -45359 |
chr17 | 71085546 | 71085596 | E067 | -44977 |
chr17 | 71085930 | 71086256 | E067 | -44317 |
chr17 | 71086506 | 71086954 | E067 | -43619 |
chr17 | 71087403 | 71087443 | E067 | -43130 |
chr17 | 71081835 | 71081879 | E068 | -48694 |
chr17 | 71082117 | 71082167 | E068 | -48406 |
chr17 | 71084827 | 71084877 | E068 | -45696 |
chr17 | 71084979 | 71085127 | E068 | -45446 |
chr17 | 71085164 | 71085214 | E068 | -45359 |
chr17 | 71085546 | 71085596 | E068 | -44977 |
chr17 | 71087153 | 71087266 | E068 | -43307 |
chr17 | 71087403 | 71087443 | E068 | -43130 |
chr17 | 71151343 | 71152977 | E068 | 20770 |
chr17 | 71084481 | 71084660 | E069 | -45913 |
chr17 | 71084979 | 71085127 | E069 | -45446 |
chr17 | 71085164 | 71085214 | E069 | -45359 |
chr17 | 71086506 | 71086954 | E069 | -43619 |
chr17 | 71087403 | 71087443 | E069 | -43130 |
chr17 | 71093052 | 71093658 | E069 | -36915 |
chr17 | 71151343 | 71152977 | E069 | 20770 |
chr17 | 71159863 | 71159948 | E069 | 29290 |
chr17 | 71086506 | 71086954 | E070 | -43619 |
chr17 | 71142983 | 71143149 | E070 | 12410 |
chr17 | 71143197 | 71143247 | E070 | 12624 |
chr17 | 71151167 | 71151221 | E070 | 20594 |
chr17 | 71151343 | 71152977 | E070 | 20770 |
chr17 | 71153026 | 71154027 | E070 | 22453 |
chr17 | 71154180 | 71154292 | E070 | 23607 |
chr17 | 71084481 | 71084660 | E071 | -45913 |
chr17 | 71084827 | 71084877 | E071 | -45696 |
chr17 | 71084979 | 71085127 | E071 | -45446 |
chr17 | 71087153 | 71087266 | E071 | -43307 |
chr17 | 71087403 | 71087443 | E071 | -43130 |
chr17 | 71151167 | 71151221 | E071 | 20594 |
chr17 | 71151343 | 71152977 | E071 | 20770 |
chr17 | 71157463 | 71157866 | E071 | 26890 |
chr17 | 71084481 | 71084660 | E072 | -45913 |
chr17 | 71085930 | 71086256 | E072 | -44317 |
chr17 | 71086506 | 71086954 | E072 | -43619 |
chr17 | 71086970 | 71087070 | E072 | -43503 |
chr17 | 71087153 | 71087266 | E072 | -43307 |
chr17 | 71087403 | 71087443 | E072 | -43130 |
chr17 | 71151343 | 71152977 | E072 | 20770 |
chr17 | 71084481 | 71084660 | E073 | -45913 |
chr17 | 71084827 | 71084877 | E073 | -45696 |
chr17 | 71084979 | 71085127 | E073 | -45446 |
chr17 | 71085164 | 71085214 | E073 | -45359 |
chr17 | 71085546 | 71085596 | E073 | -44977 |
chr17 | 71086506 | 71086954 | E073 | -43619 |
chr17 | 71086970 | 71087070 | E073 | -43503 |
chr17 | 71087153 | 71087266 | E073 | -43307 |
chr17 | 71151343 | 71152977 | E073 | 20770 |
chr17 | 71165437 | 71165497 | E073 | 34864 |
chr17 | 71165660 | 71165724 | E073 | 35087 |
chr17 | 71178807 | 71179402 | E073 | 48234 |
chr17 | 71082117 | 71082167 | E074 | -48406 |
chr17 | 71084481 | 71084660 | E074 | -45913 |
chr17 | 71086970 | 71087070 | E074 | -43503 |
chr17 | 71087153 | 71087266 | E074 | -43307 |
chr17 | 71087403 | 71087443 | E074 | -43130 |
chr17 | 71095232 | 71095410 | E074 | -35163 |
chr17 | 71095709 | 71095940 | E074 | -34633 |
chr17 | 71151343 | 71152977 | E074 | 20770 |
chr17 | 71166011 | 71166071 | E074 | 35438 |
chr17 | 71150250 | 71150304 | E081 | 19677 |
chr17 | 71150531 | 71150617 | E081 | 19958 |
chr17 | 71150699 | 71150753 | E081 | 20126 |
chr17 | 71150774 | 71150934 | E081 | 20201 |
chr17 | 71151167 | 71151221 | E081 | 20594 |
chr17 | 71151343 | 71152977 | E081 | 20770 |
chr17 | 71153026 | 71154027 | E081 | 22453 |
chr17 | 71154180 | 71154292 | E081 | 23607 |
chr17 | 71154313 | 71154435 | E081 | 23740 |
chr17 | 71154478 | 71154528 | E081 | 23905 |
chr17 | 71154578 | 71154641 | E081 | 24005 |
chr17 | 71166011 | 71166071 | E081 | 35438 |
chr17 | 71166153 | 71166230 | E081 | 35580 |
chr17 | 71173155 | 71173207 | E081 | 42582 |
chr17 | 71173640 | 71173775 | E081 | 43067 |
chr17 | 71085930 | 71086256 | E082 | -44317 |
chr17 | 71086506 | 71086954 | E082 | -43619 |
chr17 | 71089565 | 71089651 | E082 | -40922 |
chr17 | 71089706 | 71089787 | E082 | -40786 |
chr17 | 71114394 | 71114459 | E082 | -16114 |
chr17 | 71114473 | 71114547 | E082 | -16026 |
chr17 | 71114578 | 71114721 | E082 | -15852 |
chr17 | 71114877 | 71114971 | E082 | -15602 |
chr17 | 71115064 | 71115313 | E082 | -15260 |
chr17 | 71115382 | 71115525 | E082 | -15048 |
chr17 | 71150250 | 71150304 | E082 | 19677 |
chr17 | 71150531 | 71150617 | E082 | 19958 |
chr17 | 71150699 | 71150753 | E082 | 20126 |
chr17 | 71150774 | 71150934 | E082 | 20201 |
chr17 | 71151167 | 71151221 | E082 | 20594 |
chr17 | 71151343 | 71152977 | E082 | 20770 |
chr17 | 71153026 | 71154027 | E082 | 22453 |
chr17 | 71154578 | 71154641 | E082 | 24005 |
chr17 | 71154689 | 71154747 | E082 | 24116 |
chr17 | 71174040 | 71174092 | E082 | 43467 |
chr17 | 71174293 | 71174374 | E082 | 43720 |
chr17 | 71178807 | 71179402 | E082 | 48234 |
chr17 | 71179433 | 71179499 | E082 | 48860 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr17 | 71087661 | 71089396 | E067 | -41177 |
chr17 | 71160375 | 71162561 | E067 | 29802 |
chr17 | 71087661 | 71089396 | E068 | -41177 |
chr17 | 71160375 | 71162561 | E068 | 29802 |
chr17 | 71087661 | 71089396 | E069 | -41177 |
chr17 | 71087661 | 71089396 | E070 | -41177 |
chr17 | 71087661 | 71089396 | E071 | -41177 |
chr17 | 71160375 | 71162561 | E071 | 29802 |
chr17 | 71087661 | 71089396 | E072 | -41177 |
chr17 | 71160375 | 71162561 | E072 | 29802 |
chr17 | 71087661 | 71089396 | E073 | -41177 |
chr17 | 71160375 | 71162561 | E073 | 29802 |
chr17 | 71087661 | 71089396 | E074 | -41177 |
chr17 | 71160375 | 71162561 | E074 | 29802 |
chr17 | 71087661 | 71089396 | E081 | -41177 |
chr17 | 71087661 | 71089396 | E082 | -41177 |
chr17 | 71160375 | 71162561 | E082 | 29802 |