rs4979215

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
C==0284 (8513/29922,GnomAD)
C==0245 (7151/29118,TOPMED)
C==0157 (785/5008,1000G)
C==0371 (1428/3854,ALSPAC)
C==0358 (1329/3708,TWINSUK)
chr9:113141849 (GRCh38.p7) (9q32)
AD
GWASdb2
1   publication(s)
See rs on genome
340 Enhancers around
9 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.113141849C>T
GRCh37.p13 chr 9NC_000009.11:g.115904129C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.076T=0.924
1000GenomesAmericanSub694C=0.310T=0.690
1000GenomesEast AsianSub1008C=0.032T=0.968
1000GenomesEuropeSub1006C=0.365T=0.635
1000GenomesGlobalStudy-wide5008C=0.157T=0.843
1000GenomesSouth AsianSub978C=0.070T=0.930
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.371T=0.629
The Genome Aggregation DatabaseAfricanSub8718C=0.121T=0.879
The Genome Aggregation DatabaseAmericanSub834C=0.290T=0.710
The Genome Aggregation DatabaseEast AsianSub1618C=0.022T=0.978
The Genome Aggregation DatabaseEuropeSub18450C=0.384T=0.615
The Genome Aggregation DatabaseGlobalStudy-wide29922C=0.284T=0.715
The Genome Aggregation DatabaseOtherSub302C=0.270T=0.730
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.245T=0.754
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.358T=0.642
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs49792155.3E-05alcoholism (heaviness of drinking)21529783

eQTL of rs4979215 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs4979215 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr9115893116115893166E067-10963
chr9115893733115893813E067-10316
chr9115893826115894173E067-9956
chr9115894189115894408E067-9721
chr9115894474115894524E067-9605
chr9115894535115894616E067-9513
chr9115899331115900468E067-3661
chr9115900522115900661E067-3468
chr9115900858115900925E067-3204
chr9115901070115901320E067-2809
chr9115901810115901998E067-2131
chr9115902151115902218E067-1911
chr9115902343115902635E067-1494
chr9115918224115918559E06714095
chr9115918738115919011E06714609
chr9115919031115919081E06714902
chr9115919092115919143E06714963
chr9115919289115919383E06715160
chr9115919401115919445E06715272
chr9115919567115919621E06715438
chr9115919639115919731E06715510
chr9115920234115920397E06716105
chr9115920942115921005E06716813
chr9115921100115921152E06716971
chr9115922954115923152E06718825
chr9115923175115923296E06719046
chr9115923508115923850E06719379
chr9115923890115923940E06719761
chr9115926611115926691E06722482
chr9115926692115926817E06722563
chr9115926832115927156E06722703
chr9115927288115927349E06723159
chr9115927375115927503E06723246
chr9115927560115927622E06723431
chr9115947258115947308E06743129
chr9115947329115948044E06743200
chr9115874313115874380E068-29749
chr9115874853115875225E068-28904
chr9115893116115893166E068-10963
chr9115893733115893813E068-10316
chr9115893826115894173E068-9956
chr9115894189115894408E068-9721
chr9115894474115894524E068-9605
chr9115894535115894616E068-9513
chr9115899116115899241E068-4888
chr9115899331115900468E068-3661
chr9115900522115900661E068-3468
chr9115900858115900925E068-3204
chr9115901070115901320E068-2809
chr9115901810115901998E068-2131
chr9115902151115902218E068-1911
chr9115902343115902635E068-1494
chr9115903302115903672E068-457
chr9115904020115904070E068-59
chr9115905693115906452E0681564
chr9115909566115910039E0685437
chr9115920234115920397E06816105
chr9115920942115921005E06816813
chr9115921100115921152E06816971
chr9115921323115921418E06817194
chr9115922348115922412E06818219
chr9115922954115923152E06818825
chr9115923175115923296E06819046
chr9115923508115923850E06819379
chr9115923890115923940E06819761
chr9115925383115925585E06821254
chr9115925692115925755E06821563
chr9115925892115925936E06821763
chr9115926611115926691E06822482
chr9115926692115926817E06822563
chr9115926832115927156E06822703
chr9115927288115927349E06823159
chr9115927375115927503E06823246
chr9115927560115927622E06823431
chr9115927991115928071E06823862
chr9115928117115928167E06823988
chr9115928524115928574E06824395
chr9115929068115929162E06824939
chr9115949663115949722E06845534
chr9115949762115949872E06845633
chr9115949916115950022E06845787
chr9115950071115950941E06845942
chr9115883927115883967E069-20162
chr9115893116115893166E069-10963
chr9115893733115893813E069-10316
chr9115893826115894173E069-9956
chr9115894189115894408E069-9721
chr9115894474115894524E069-9605
chr9115894535115894616E069-9513
chr9115897944115898343E069-5786
chr9115898722115898772E069-5357
chr9115899116115899241E069-4888
chr9115899331115900468E069-3661
chr9115900522115900661E069-3468
chr9115900858115900925E069-3204
chr9115901070115901320E069-2809
chr9115901810115901998E069-2131
chr9115902151115902218E069-1911
chr9115902343115902635E069-1494
chr9115903302115903672E069-457
chr9115904020115904070E069-59
chr9115905693115906452E0691564
chr9115909566115910039E0695437
chr9115920234115920397E06916105
chr9115920942115921005E06916813
chr9115921100115921152E06916971
chr9115921323115921418E06917194
chr9115922348115922412E06918219
chr9115922954115923152E06918825
chr9115923175115923296E06919046
chr9115923508115923850E06919379
chr9115923890115923940E06919761
chr9115925184115925280E06921055
chr9115925383115925585E06921254
chr9115925692115925755E06921563
chr9115925892115925936E06921763
chr9115926611115926691E06922482
chr9115926692115926817E06922563
chr9115926832115927156E06922703
chr9115927288115927349E06923159
chr9115927375115927503E06923246
chr9115927560115927622E06923431
chr9115927991115928071E06923862
chr9115928117115928167E06923988
chr9115928524115928574E06924395
chr9115947329115948044E06943200
chr9115926832115927156E07022703
chr9115927288115927349E07023159
chr9115927375115927503E07023246
chr9115927560115927622E07023431
chr9115873927115874295E071-29834
chr9115874313115874380E071-29749
chr9115874438115874518E071-29611
chr9115874853115875225E071-28904
chr9115892137115892214E071-11915
chr9115892274115892329E071-11800
chr9115892342115892421E071-11708
chr9115892781115893014E071-11115
chr9115893116115893166E071-10963
chr9115893733115893813E071-10316
chr9115893826115894173E071-9956
chr9115894189115894408E071-9721
chr9115894474115894524E071-9605
chr9115894535115894616E071-9513
chr9115897944115898343E071-5786
chr9115898722115898772E071-5357
chr9115899116115899241E071-4888
chr9115899331115900468E071-3661
chr9115900522115900661E071-3468
chr9115900858115900925E071-3204
chr9115901070115901320E071-2809
chr9115901810115901998E071-2131
chr9115902151115902218E071-1911
chr9115902343115902635E071-1494
chr9115904020115904070E071-59
chr9115905693115906452E0711564
chr9115906712115906806E0712583
chr9115906850115906919E0712721
chr9115909566115910039E0715437
chr9115910068115910122E0715939
chr9115910470115911121E0716341
chr9115911171115911287E0717042
chr9115911330115911380E0717201
chr9115911439115911847E0717310
chr9115920942115921005E07116813
chr9115921100115921152E07116971
chr9115921323115921418E07117194
chr9115922348115922412E07118219
chr9115922954115923152E07118825
chr9115923175115923296E07119046
chr9115923508115923850E07119379
chr9115923890115923940E07119761
chr9115924002115924062E07119873
chr9115924080115924164E07119951
chr9115924310115924502E07120181
chr9115924671115924722E07120542
chr9115925072115925116E07120943
chr9115925184115925280E07121055
chr9115925383115925585E07121254
chr9115925692115925755E07121563
chr9115925892115925936E07121763
chr9115926611115926691E07122482
chr9115926692115926817E07122563
chr9115926832115927156E07122703
chr9115927288115927349E07123159
chr9115927375115927503E07123246
chr9115927560115927622E07123431
chr9115927991115928071E07123862
chr9115928117115928167E07123988
chr9115928524115928574E07124395
chr9115929068115929162E07124939
chr9115929217115929286E07125088
chr9115947258115947308E07143129
chr9115947329115948044E07143200
chr9115873927115874295E072-29834
chr9115874313115874380E072-29749
chr9115874853115875225E072-28904
chr9115883927115883967E072-20162
chr9115892274115892329E072-11800
chr9115892342115892421E072-11708
chr9115892781115893014E072-11115
chr9115893116115893166E072-10963
chr9115893733115893813E072-10316
chr9115893826115894173E072-9956
chr9115894189115894408E072-9721
chr9115894474115894524E072-9605
chr9115894535115894616E072-9513
chr9115899116115899241E072-4888
chr9115899331115900468E072-3661
chr9115900522115900661E072-3468
chr9115900858115900925E072-3204
chr9115901070115901320E072-2809
chr9115903302115903672E072-457
chr9115904020115904070E072-59
chr9115905693115906452E0721564
chr9115909566115910039E0725437
chr9115917830115917889E07213701
chr9115918011115918055E07213882
chr9115918224115918559E07214095
chr9115918738115919011E07214609
chr9115919031115919081E07214902
chr9115919092115919143E07214963
chr9115919289115919383E07215160
chr9115919401115919445E07215272
chr9115919567115919621E07215438
chr9115919639115919731E07215510
chr9115920234115920397E07216105
chr9115920942115921005E07216813
chr9115921100115921152E07216971
chr9115922954115923152E07218825
chr9115923175115923296E07219046
chr9115923508115923850E07219379
chr9115923890115923940E07219761
chr9115924002115924062E07219873
chr9115924080115924164E07219951
chr9115924310115924502E07220181
chr9115924671115924722E07220542
chr9115925072115925116E07220943
chr9115925184115925280E07221055
chr9115925383115925585E07221254
chr9115926611115926691E07222482
chr9115926692115926817E07222563
chr9115926832115927156E07222703
chr9115927288115927349E07223159
chr9115927375115927503E07223246
chr9115927560115927622E07223431
chr9115927991115928071E07223862
chr9115928117115928167E07223988
chr9115928524115928574E07224395
chr9115929068115929162E07224939
chr9115947258115947308E07243129
chr9115947329115948044E07243200
chr9115892781115893014E073-11115
chr9115893116115893166E073-10963
chr9115893733115893813E073-10316
chr9115893826115894173E073-9956
chr9115894189115894408E073-9721
chr9115894474115894524E073-9605
chr9115894535115894616E073-9513
chr9115899331115900468E073-3661
chr9115900522115900661E073-3468
chr9115900858115900925E073-3204
chr9115901070115901320E073-2809
chr9115901810115901998E073-2131
chr9115902151115902218E073-1911
chr9115902343115902635E073-1494
chr9115917830115917889E07313701
chr9115918011115918055E07313882
chr9115918224115918559E07314095
chr9115918738115919011E07314609
chr9115919031115919081E07314902
chr9115919092115919143E07314963
chr9115919289115919383E07315160
chr9115919401115919445E07315272
chr9115919567115919621E07315438
chr9115919639115919731E07315510
chr9115926611115926691E07322482
chr9115926692115926817E07322563
chr9115926832115927156E07322703
chr9115927288115927349E07323159
chr9115927375115927503E07323246
chr9115927560115927622E07323431
chr9115927991115928071E07323862
chr9115928117115928167E07323988
chr9115928524115928574E07324395
chr9115892781115893014E074-11115
chr9115893116115893166E074-10963
chr9115893733115893813E074-10316
chr9115893826115894173E074-9956
chr9115894189115894408E074-9721
chr9115894474115894524E074-9605
chr9115894535115894616E074-9513
chr9115898722115898772E074-5357
chr9115899116115899241E074-4888
chr9115899331115900468E074-3661
chr9115900522115900661E074-3468
chr9115900858115900925E074-3204
chr9115901070115901320E074-2809
chr9115901810115901998E074-2131
chr9115902151115902218E074-1911
chr9115902343115902635E074-1494
chr9115903302115903672E074-457
chr9115905693115906452E0741564
chr9115909566115910039E0745437
chr9115910068115910122E0745939
chr9115919401115919445E07415272
chr9115919567115919621E07415438
chr9115919639115919731E07415510
chr9115921323115921418E07417194
chr9115922348115922412E07418219
chr9115922954115923152E07418825
chr9115923175115923296E07419046
chr9115923508115923850E07419379
chr9115923890115923940E07419761
chr9115924002115924062E07419873
chr9115924080115924164E07419951
chr9115924310115924502E07420181
chr9115924671115924722E07420542
chr9115925072115925116E07420943
chr9115925184115925280E07421055
chr9115925383115925585E07421254
chr9115925692115925755E07421563
chr9115925892115925936E07421763
chr9115926611115926691E07422482
chr9115926692115926817E07422563
chr9115926832115927156E07422703
chr9115927288115927349E07423159
chr9115927375115927503E07423246
chr9115927560115927622E07423431
chr9115927991115928071E07423862
chr9115928117115928167E07423988
chr9115928524115928574E07424395
chr9115929068115929162E07424939
chr9115929217115929286E07425088
chr9115947258115947308E07443129
chr9115947329115948044E07443200
chr9115948525115948789E07444396
chr9115926611115926691E08122482
chr9115926692115926817E08122563
chr9115926832115927156E08122703









Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr9115912513115915377E0678384
chr9115912513115915377E0688384
chr9115912513115915377E0698384
chr9115912513115915377E0708384
chr9115912513115915377E0718384
chr9115912513115915377E0728384
chr9115912513115915377E0738384
chr9115912513115915377E0748384
chr9115912513115915377E0828384