rs5023277

Homo sapiens
C>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0229 (6862/29876,GnomAD)
G=0317 (9238/29118,TOPMED)
G=0242 (1212/5008,1000G)
G=0104 (401/3854,ALSPAC)
G=0108 (400/3708,TWINSUK)
chr3:164868927 (GRCh38.p7) (3q26.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.164868927C>G
GRCh37.p13 chr 3NC_000003.11:g.164586715C>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.381G=0.619
1000GenomesAmericanSub694C=0.900G=0.100
1000GenomesEast AsianSub1008C=0.901G=0.099
1000GenomesEuropeSub1006C=0.906G=0.094
1000GenomesGlobalStudy-wide5008C=0.758G=0.242
1000GenomesSouth AsianSub978C=0.870G=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.896G=0.104
The Genome Aggregation DatabaseAfricanSub8670C=0.430G=0.570
The Genome Aggregation DatabaseAmericanSub834C=0.920G=0.080
The Genome Aggregation DatabaseEast AsianSub1620C=0.892G=0.108
The Genome Aggregation DatabaseEuropeSub18450C=0.910G=0.089
The Genome Aggregation DatabaseGlobalStudy-wide29876C=0.770G=0.229
The Genome Aggregation DatabaseOtherSub302C=0.910G=0.090
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.682G=0.317
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.892G=0.108
PMID Title Author Journal
24962325Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.Kapoor MDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs50232774.99E-09alcohol dependence (age at onset)24962325

eQTL of rs5023277 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs5023277 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.