SNP Detail Info-rs514463

Molecule type	Change	Amino acid[Codon]	SO Term
MAGI2 transcript variant 2	NM_001301128.1:c.	N/A	Intron Variant
MAGI2 transcript variant 1	NM_012301.3:c.	N/A	Intron Variant
MAGI2 transcript variant X6	XM_011516718.1:c.	N/A	Intron Variant
MAGI2 transcript variant X1	XM_017012840.1:c.	N/A	Intron Variant
MAGI2 transcript variant X2	XM_017012841.1:c.	N/A	Intron Variant
MAGI2 transcript variant X3	XM_017012842.1:c.	N/A	Intron Variant
MAGI2 transcript variant X4	XM_017012843.1:c.	N/A	Intron Variant
MAGI2 transcript variant X5	XM_017012844.1:c.	N/A	Intron Variant
MAGI2 transcript variant X7	XM_017012845.1:c.	N/A	Intron Variant
MAGI2 transcript variant X8	XM_017012846.1:c.	N/A	Intron Variant
MAGI2 transcript variant X14	XM_017012850.1:c.	N/A	Intron Variant
MAGI2 transcript variant X15	XM_017012851.1:c.	N/A	Intron Variant
MAGI2 transcript variant X16	XM_017012852.1:c.	N/A	Intron Variant
MAGI2 transcript variant X9	XM_011516719.2:c.	N/A	Genic Upstream Transcript Variant
MAGI2 transcript variant X10	XM_011516720.2:c.	N/A	Genic Upstream Transcript Variant
MAGI2 transcript variant X17	XM_011516726.2:c.	N/A	Genic Upstream Transcript Variant
MAGI2 transcript variant X19	XM_011516728.1:c.	N/A	Genic Upstream Transcript Variant
MAGI2 transcript variant X11	XM_017012847.1:c.	N/A	Genic Upstream Transcript Variant
MAGI2 transcript variant X12	XM_017012848.1:c.	N/A	Genic Upstream Transcript Variant
MAGI2 transcript variant X13	XM_017012849.1:c.	N/A	Genic Upstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.626	A=0.374
1000Genomes	American	Sub	694	G=0.200	A=0.800
1000Genomes	East Asian	Sub	1008	G=0.235	A=0.765
1000Genomes	Europe	Sub	1006	G=0.056	A=0.944
1000Genomes	Global	Study-wide	5008	G=0.277	A=0.723
1000Genomes	South Asian	Sub	978	G=0.130	A=0.870
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.068	A=0.932
The Genome Aggregation Database	African	Sub	8690	G=0.518	A=0.482
The Genome Aggregation Database	American	Sub	836	G=0.190	A=0.810
The Genome Aggregation Database	East Asian	Sub	1616	G=0.256	A=0.744
The Genome Aggregation Database	Europe	Sub	18492	G=0.050	A=0.949
The Genome Aggregation Database	Global	Study-wide	29936	G=0.201	A=0.798
The Genome Aggregation Database	Other	Sub	302	G=0.070	A=0.930
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.280	A=0.719
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.068	A=0.932

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs514463	0.000652	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr7	78479751	78479838	E067	-24893
chr7	78479921	78480028	E067	-24703
chr7	78480093	78480143	E067	-24588
chr7	78480596	78480775	E067	-23956
chr7	78479751	78479838	E069	-24893
chr7	78479921	78480028	E069	-24703
chr7	78480093	78480143	E069	-24588
chr7	78493133	78493372	E070	-11359
chr7	78493795	78493914	E070	-10817
chr7	78479751	78479838	E071	-24893
chr7	78479921	78480028	E071	-24703
chr7	78480093	78480143	E071	-24588
chr7	78531943	78532003	E071	27212
chr7	78532058	78532151	E071	27327
chr7	78532248	78532479	E071	27517
chr7	78479751	78479838	E072	-24893
chr7	78479921	78480028	E072	-24703
chr7	78480093	78480143	E072	-24588
chr7	78480596	78480775	E072	-23956
chr7	78479751	78479838	E073	-24893
chr7	78479921	78480028	E073	-24703
chr7	78480093	78480143	E073	-24588
chr7	78479921	78480028	E074	-24703
chr7	78480093	78480143	E074	-24588
chr7	78480596	78480775	E074	-23956
chr7	78492519	78493113	E082	-11618
chr7	78493133	78493372	E082	-11359
chr7	78493795	78493914	E082	-10817
chr7	78530199	78530436	E082	25468
chr7	78530492	78530555	E082	25761

rs514463