Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 11 | NC_000011.10:g.124092093G>A |
GRCh37.p13 chr 11 | NC_000011.9:g.123962800G>A |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.095 | A=0.905 |
1000Genomes | American | Sub | 694 | G=0.200 | A=0.800 |
1000Genomes | East Asian | Sub | 1008 | G=0.211 | A=0.789 |
1000Genomes | Europe | Sub | 1006 | G=0.089 | A=0.911 |
1000Genomes | Global | Study-wide | 5008 | G=0.134 | A=0.866 |
1000Genomes | South Asian | Sub | 978 | G=0.110 | A=0.890 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.088 | A=0.912 |
The Genome Aggregation Database | African | Sub | 8726 | G=0.095 | A=0.905 |
The Genome Aggregation Database | American | Sub | 838 | G=0.200 | A=0.800 |
The Genome Aggregation Database | East Asian | Sub | 1612 | G=0.235 | A=0.765 |
The Genome Aggregation Database | Europe | Sub | 18420 | G=0.078 | A=0.921 |
The Genome Aggregation Database | Global | Study-wide | 29898 | G=0.095 | A=0.904 |
The Genome Aggregation Database | Other | Sub | 302 | G=0.070 | A=0.930 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.107 | A=0.893 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.091 | A=0.909 |
PMID | Title | Author | Journal |
---|---|---|---|
17158188 | Novel genes identified in a high-density genome wide association study for nicotine dependence. | Bierut LJ | Hum Mol Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs526257 | 0.000498 | nicotine dependence | 17158188 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr11 | 123940864 | 123940941 | E068 | -21859 |
chr11 | 123941055 | 123941139 | E068 | -21661 |
chr11 | 123941292 | 123941369 | E068 | -21431 |
chr11 | 123987705 | 123987764 | E068 | 24905 |
chr11 | 123939453 | 123939969 | E070 | -22831 |
chr11 | 123984472 | 123984682 | E071 | 21672 |
chr11 | 123984724 | 123984968 | E071 | 21924 |
chr11 | 123957837 | 123957981 | E072 | -4819 |
chr11 | 123940864 | 123940941 | E081 | -21859 |
chr11 | 123956096 | 123957050 | E081 | -5750 |
chr11 | 123961697 | 123962118 | E081 | -682 |
chr11 | 123964147 | 123964385 | E081 | 1347 |
chr11 | 123964518 | 123964693 | E081 | 1718 |
chr11 | 123939453 | 123939969 | E082 | -22831 |
chr11 | 123956096 | 123957050 | E082 | -5750 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr11 | 123946528 | 123947549 | E067 | -15251 |
chr11 | 123985435 | 123987315 | E067 | 22635 |
chr11 | 123946528 | 123947549 | E068 | -15251 |
chr11 | 123985435 | 123987315 | E068 | 22635 |
chr11 | 123946528 | 123947549 | E069 | -15251 |
chr11 | 123985435 | 123987315 | E069 | 22635 |
chr11 | 123946528 | 123947549 | E070 | -15251 |
chr11 | 123985435 | 123987315 | E070 | 22635 |
chr11 | 123946528 | 123947549 | E071 | -15251 |
chr11 | 123985435 | 123987315 | E071 | 22635 |
chr11 | 123946528 | 123947549 | E072 | -15251 |
chr11 | 123985435 | 123987315 | E072 | 22635 |
chr11 | 123946528 | 123947549 | E073 | -15251 |
chr11 | 123985435 | 123987315 | E073 | 22635 |
chr11 | 123946528 | 123947549 | E074 | -15251 |
chr11 | 123985435 | 123987315 | E074 | 22635 |
chr11 | 123985435 | 123987315 | E081 | 22635 |
chr11 | 123946528 | 123947549 | E082 | -15251 |
chr11 | 123985435 | 123987315 | E082 | 22635 |