rs532241

Homo sapiens
T>G
None
Check p-value
SNV (Single Nucleotide Variation)
T==0467 (13625/29118,TOPMED)
T==0427 (2136/5008,1000G)
G=0421 (1623/3854,ALSPAC)
G=0394 (1461/3708,TWINSUK)
chr18:10140632 (GRCh38.p7) (18p11.22)
AD
GWASdb2
1   publication(s)
See rs on genome
46 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 18NC_000018.10:g.10140632T>G
GRCh37.p13 chr 18NC_000018.9:g.10140629T>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.380G=0.620
1000GenomesAmericanSub694T=0.570G=0.430
1000GenomesEast AsianSub1008T=0.364G=0.636
1000GenomesEuropeSub1006T=0.578G=0.422
1000GenomesGlobalStudy-wide5008T=0.427G=0.573
1000GenomesSouth AsianSub978T=0.300G=0.700
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.579G=0.421
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.467G=0.532
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.606G=0.394
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs5322410.00072alcohol dependence20201924

eQTL of rs532241 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs532241 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr181010093510102037E067-38592
chr181013257110132616E067-8013
chr181013264310132703E067-7926
chr181013283610132943E067-7686
chr181010020410100589E068-40040
chr181010059010100854E068-39775
chr181010093510102037E068-38592
chr181014357510144352E0682946
chr181010093510102037E069-38592
chr181013257110132616E069-8013
chr181010059010100854E070-39775
chr181010093510102037E070-38592
chr181010207410102263E070-38366
chr181012887110129302E070-11327
chr181012943510129564E070-11065
chr181012963210129686E070-10943
chr181012975410129822E070-10807
chr181013001710130067E070-10562
chr181013010910130187E070-10442
chr181013057710130955E070-9674
chr181014246410143123E0701835
chr181010093510102037E071-38592
chr181016998410170083E07129355
chr181017010710170189E07129478
chr181017037610170430E07129747
chr181017049210170680E07129863
chr181010093510102037E072-38592
chr181010093510102037E074-38592
chr181013257110132616E074-8013
chr181016900810169727E07428379
chr181016981910169908E07429190
chr181016998410170083E07429355
chr181017010710170189E07429478
chr181017037610170430E07429747
chr181017049210170680E07429863
chr181010020410100589E081-40040
chr181010059010100854E081-39775
chr181014246410143123E0811835
chr181012887110129302E082-11327
chr181012943510129564E082-11065
chr181012963210129686E082-10943
chr181012975410129822E082-10807
chr181013001710130067E082-10562
chr181013010910130187E082-10442
chr181013057710130955E082-9674
chr181013257110132616E082-8013