rs532723366

Homo sapiens
delGTCT
LOC339622 : Intron Variant
Check p-value
Indel (Insertion and Deletion)
None (
chr21:24842732-24842742 (GRCh38.p7) (21q21.2)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 21NC_000021.9:g.24842735_24842738[1]
GRCh37.p13 chr 21NC_000021.8:g.26215049_26215052[1]

Gene: LOC339622, uncharacterized LOC339622(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LINC01692 transcriptNR_046198.3:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs5327233660.00015alcohol dependence20201924

eQTL of rs532723366 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs532723366 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.