SNP Detail Info-rs534632

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0058 (1750/29942,GnomAD)
A=0088 (2572/29118,TOPMED)
A=0084 (422/5008,1000G)
A=0004 (14/3854,ALSPAC)
A=0003 (12/3708,TWINSUK)

Position: chr9:22458981 (GRCh38.p7) (9p21.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 14 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 9	NC_000009.12:g.22458981G>A
GRCh37.p13 chr 9	NC_000009.11:g.22458980G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.781	A=0.219
1000Genomes	American	Sub	694	G=0.970	A=0.030
1000Genomes	East Asian	Sub	1008	G=0.950	A=0.050
1000Genomes	Europe	Sub	1006	G=0.997	A=0.003
1000Genomes	Global	Study-wide	5008	G=0.916	A=0.084
1000Genomes	South Asian	Sub	978	G=0.940	A=0.060
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.996	A=0.004
The Genome Aggregation Database	African	Sub	8718	G=0.815	A=0.185
The Genome Aggregation Database	American	Sub	836	G=0.980	A=0.020
The Genome Aggregation Database	East Asian	Sub	1592	G=0.965	A=0.035
The Genome Aggregation Database	Europe	Sub	18494	G=0.996	A=0.003
The Genome Aggregation Database	Global	Study-wide	29942	G=0.941	A=0.058
The Genome Aggregation Database	Other	Sub	302	G=0.990	A=0.010
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.911	A=0.088
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.997	A=0.003

PMID	Title	Author	Journal

SNP ID	p-value	Traits	Study
rs534632	9.32E-29	alcohol consumption	pha001398

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr9	22481632	22481863	E081	22652

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr9	22446345	22448406	E067	-10574
chr9	22446345	22448406	E068	-10574
chr9	22448495	22448568	E068	-10412
chr9	22448752	22448832	E068	-10148
chr9	22448952	22449057	E068	-9923
chr9	22446345	22448406	E069	-10574
chr9	22446345	22448406	E070	-10574
chr9	22446345	22448406	E071	-10574
chr9	22448495	22448568	E071	-10412
chr9	22448752	22448832	E071	-10148
chr9	22446345	22448406	E072	-10574
chr9	22446345	22448406	E073	-10574
chr9	22446345	22448406	E074	-10574
chr9	22446345	22448406	E082	-10574

rs534632