SNP Detail Info-rs553372

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0251 (7501/29876,GnomAD)
A=0231 (6750/29118,TOPMED)
A=0252 (1264/5008,1000G)
A=0201 (776/3854,ALSPAC)
A=0213 (791/3708,TWINSUK)

Position: chr4:178125465 (GRCh38.p7) (4q34.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 4	NC_000004.12:g.178125465G>A
GRCh37.p13 chr 4	NC_000004.11:g.179046619G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.735	A=0.265
1000Genomes	American	Sub	694	G=0.850	A=0.150
1000Genomes	East Asian	Sub	1008	G=0.641	A=0.359
1000Genomes	Europe	Sub	1006	G=0.768	A=0.232
1000Genomes	Global	Study-wide	5008	G=0.748	A=0.252
1000Genomes	South Asian	Sub	978	G=0.780	A=0.220
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.799	A=0.201
The Genome Aggregation Database	African	Sub	8712	G=0.732	A=0.268
The Genome Aggregation Database	American	Sub	838	G=0.810	A=0.190
The Genome Aggregation Database	East Asian	Sub	1604	G=0.635	A=0.365
The Genome Aggregation Database	Europe	Sub	18420	G=0.762	A=0.237
The Genome Aggregation Database	Global	Study-wide	29876	G=0.748	A=0.251
The Genome Aggregation Database	Other	Sub	302	G=0.820	A=0.180
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.768	A=0.231
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.787	A=0.213

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs553372	0.000623	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs553372