rs562832

Homo sapiens
C>T
ZNF236 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C==0330 (9900/29940,GnomAD)
C==0370 (10793/29118,TOPMED)
C==0318 (1594/5008,1000G)
C==0296 (1140/3854,ALSPAC)
C==0300 (1113/3708,TWINSUK)
chr18:76915143 (GRCh38.p7) (18q23)
AD
GWASdb2
1   publication(s)
See rs on genome
44 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 18NC_000018.10:g.76915143C>T
GRCh37.p13 chr 18NC_000018.9:g.74627099C>T

Gene: ZNF236, zinc finger protein 236(plus strand)

Molecule type Change Amino acid[Codon] SO Term
ZNF236 transcript variant 1NM_001306089.1:c.N/AIntron Variant
ZNF236 transcript variant 2NM_007345.3:c.N/AIntron Variant
ZNF236 transcript variant X2XM_005266762.3:c.N/AIntron Variant
ZNF236 transcript variant X1XM_011526165.2:c.N/AIntron Variant
ZNF236 transcript variant X2XM_011526166.2:c.N/AIntron Variant
ZNF236 transcript variant X3XM_011526168.2:c.N/AIntron Variant
ZNF236 transcript variant X5XM_011526169.2:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.472T=0.528
1000GenomesAmericanSub694C=0.270T=0.730
1000GenomesEast AsianSub1008C=0.166T=0.834
1000GenomesEuropeSub1006C=0.304T=0.696
1000GenomesGlobalStudy-wide5008C=0.318T=0.682
1000GenomesSouth AsianSub978C=0.320T=0.680
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.296T=0.704
The Genome Aggregation DatabaseAfricanSub8700C=0.462T=0.538
The Genome Aggregation DatabaseAmericanSub838C=0.200T=0.800
The Genome Aggregation DatabaseEast AsianSub1618C=0.137T=0.863
The Genome Aggregation DatabaseEuropeSub18482C=0.291T=0.708
The Genome Aggregation DatabaseGlobalStudy-wide29940C=0.330T=0.669
The Genome Aggregation DatabaseOtherSub302C=0.360T=0.640
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.370T=0.629
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.300T=0.700
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs5628320.00094alcohol dependence21314694

eQTL of rs562832 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs562832 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr187459723174597336E067-29763
chr187463706374637514E0679964
chr187463757874637690E06710479
chr187459723174597336E068-29763
chr187466515774666046E06838058
chr187466612774666177E06839028
chr187466624374666429E06839144
chr187459709774597148E069-29951
chr187459723174597336E069-29763
chr187459744474598422E069-28677
chr187463706374637514E0699964
chr187463757874637690E06910479
chr187466515774666046E06938058
chr187466612774666177E06939028
chr187466624374666429E06939144
chr187459744474598422E070-28677
chr187467056574670656E07043466
chr187467070474671479E07043605
chr187459709774597148E071-29951
chr187459723174597336E071-29763
chr187459744474598422E071-28677
chr187466515774666046E07138058
chr187459709774597148E072-29951
chr187459723174597336E072-29763
chr187459744474598422E072-28677
chr187460623474606361E072-20738
chr187460670874606772E072-20327
chr187463706374637514E0729964
chr187463757874637690E07210479
chr187467056574670656E07243466
chr187459723174597336E073-29763
chr187459744474598422E073-28677
chr187466483574664897E07337736
chr187466503174665085E07337932
chr187466515774666046E07338058
chr187466612774666177E07339028
chr187466624374666429E07339144
chr187467056574670656E07343466
chr187467070474671479E07343605
chr187459709774597148E074-29951
chr187459723174597336E074-29763
chr187466515774666046E07438058
chr187457833574578417E081-48682
chr187457863674578973E081-48126