rs564376

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0317 (9485/29908,GnomAD)
C=0335 (9770/29118,TOPMED)
C=0367 (1836/5008,1000G)
C=0192 (740/3854,ALSPAC)
C=0191 (707/3708,TWINSUK)
chr6:108710797 (GRCh38.p7) (6q21)
AD
GWASdb2
1   publication(s)
See rs on genome
311 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.108710797T>C
GRCh37.p13 chr 6NC_000006.11:g.109032000T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.415C=0.585
1000GenomesAmericanSub694T=0.850C=0.150
1000GenomesEast AsianSub1008T=0.712C=0.288
1000GenomesEuropeSub1006T=0.763C=0.237
1000GenomesGlobalStudy-wide5008T=0.633C=0.367
1000GenomesSouth AsianSub978T=0.560C=0.440
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.808C=0.192
The Genome Aggregation DatabaseAfricanSub8692T=0.486C=0.514
The Genome Aggregation DatabaseAmericanSub838T=0.860C=0.140
The Genome Aggregation DatabaseEast AsianSub1608T=0.722C=0.278
The Genome Aggregation DatabaseEuropeSub18468T=0.763C=0.236
The Genome Aggregation DatabaseGlobalStudy-wide29908T=0.682C=0.317
The Genome Aggregation DatabaseOtherSub302T=0.730C=0.270
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.664C=0.335
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.809C=0.191
PMID Title Author Journal
23953852Genome-wide association studies of maximum number of drinks.Pan YJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs5643765.32E-05alcohol consumption23953852

eQTL of rs564376 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs564376 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr6108982628108982998E067-49002
chr6108989161108989681E067-42319
chr6108991298108991370E067-40630
chr6108992045108992166E067-39834
chr6108992211108992283E067-39717
chr6108992438108992572E067-39428
chr6108992644108992698E067-39302
chr6108993041108993091E067-38909
chr6108993096108993239E067-38761
chr6108993960108994054E067-37946
chr6108994902108995133E067-36867
chr6108995383108995470E067-36530
chr6108995674108995855E067-36145
chr6108996410108996473E067-35527
chr6108996576108996740E067-35260
chr6108996895108997188E067-34812
chr6108997191108997398E067-34602
chr6108997679108997760E067-34240
chr6108997907108998086E067-33914
chr6108998266108998306E067-33694
chr6108998650108998731E067-33269
chr6108998787108998873E067-33127
chr6108998998108999052E067-32948
chr6108999317108999409E067-32591
chr6109000853109000893E067-31107
chr6109011542109012015E067-19985
chr6109018731109018871E067-13129
chr6109065303109066188E06733303
chr6109066238109066643E06734238
chr6109073355109073604E06741355
chr6109073682109073801E06741682
chr6109073995109074194E06741995
chr6109074290109074729E06742290
chr6108982628108982998E068-49002
chr6108983051108983109E068-48891
chr6108989161108989681E068-42319
chr6108991298108991370E068-40630
chr6108992045108992166E068-39834
chr6108992211108992283E068-39717
chr6108992438108992572E068-39428
chr6108992644108992698E068-39302
chr6108993041108993091E068-38909
chr6108993096108993239E068-38761
chr6108993960108994054E068-37946
chr6108994902108995133E068-36867
chr6108995383108995470E068-36530
chr6108995674108995855E068-36145
chr6108996410108996473E068-35527
chr6108996576108996740E068-35260
chr6108996895108997188E068-34812
chr6108997191108997398E068-34602
chr6108997679108997760E068-34240
chr6108997907108998086E068-33914
chr6108998266108998306E068-33694
chr6108998650108998731E068-33269
chr6108998787108998873E068-33127
chr6109000853109000893E068-31107
chr6109006006109006522E068-25478
chr6109010001109010063E068-21937
chr6109010201109011356E068-20644
chr6109011542109012015E068-19985
chr6109018731109018871E068-13129
chr6109018935109019096E068-12904
chr6109019170109019239E068-12761
chr6109019288109019346E068-12654
chr6109028632109028829E068-3171
chr6109028861109028919E068-3081
chr6109029374109029445E068-2555
chr6109035194109035937E0683194
chr6109042481109042804E06810481
chr6109042963109043013E06810963
chr6109064930109065041E06832930
chr6109065303109066188E06833303
chr6109066238109066643E06834238
chr6109073205109073284E06841205
chr6109073355109073604E06841355
chr6109073682109073801E06841682
chr6109073995109074194E06841995
chr6109074290109074729E06842290
chr6108983051108983109E069-48891
chr6108983306108983412E069-48588
chr6108988045108988462E069-43538
chr6108989161108989681E069-42319
chr6108991298108991370E069-40630
chr6108992045108992166E069-39834
chr6108992211108992283E069-39717
chr6108992438108992572E069-39428
chr6108992644108992698E069-39302
chr6108993041108993091E069-38909
chr6108993096108993239E069-38761
chr6108993960108994054E069-37946
chr6108994902108995133E069-36867
chr6108995383108995470E069-36530
chr6108995674108995855E069-36145
chr6108996410108996473E069-35527
chr6108996576108996740E069-35260
chr6108996895108997188E069-34812
chr6108997191108997398E069-34602
chr6108997679108997760E069-34240
chr6108997907108998086E069-33914
chr6108998266108998306E069-33694
chr6108998650108998731E069-33269
chr6108998787108998873E069-33127
chr6108998998108999052E069-32948
chr6108999317108999409E069-32591
chr6109001650109001834E069-30166
chr6109002175109002229E069-29771
chr6109010201109011356E069-20644
chr6109011542109012015E069-19985
chr6109042481109042804E06910481
chr6109064930109065041E06932930
chr6109065303109066188E06933303
chr6109066238109066643E06934238
chr6109073355109073604E06941355
chr6109073682109073801E06941682
chr6109073995109074194E06941995
chr6109074290109074729E06942290
chr6109074891109074941E06942891
chr6108986203108986316E070-45684
chr6108986750108986996E070-45004
chr6108992211108992283E070-39717
chr6108992438108992572E070-39428
chr6108992644108992698E070-39302
chr6108993041108993091E070-38909
chr6108993096108993239E070-38761
chr6109020556109021277E070-10723
chr6109064930109065041E07032930
chr6109065303109066188E07033303
chr6109066238109066643E07034238
chr6109067372109067457E07035372
chr6109073205109073284E07041205
chr6109073355109073604E07041355
chr6109073682109073801E07041682
chr6109073995109074194E07041995
chr6109074290109074729E07042290
chr6109074891109074941E07042891
chr6108982628108982998E071-49002
chr6108983051108983109E071-48891
chr6108983306108983412E071-48588
chr6108988045108988462E071-43538
chr6108989161108989681E071-42319
chr6108992045108992166E071-39834
chr6108992211108992283E071-39717
chr6108992438108992572E071-39428
chr6108992644108992698E071-39302
chr6108993041108993091E071-38909
chr6108993096108993239E071-38761
chr6108993960108994054E071-37946
chr6108994902108995133E071-36867
chr6108995383108995470E071-36530
chr6108995674108995855E071-36145
chr6108996410108996473E071-35527
chr6108996576108996740E071-35260
chr6108996895108997188E071-34812
chr6108997191108997398E071-34602
chr6108997679108997760E071-34240
chr6108997907108998086E071-33914
chr6108998266108998306E071-33694
chr6108998650108998731E071-33269
chr6108998787108998873E071-33127
chr6108998998108999052E071-32948
chr6108999317108999409E071-32591
chr6108999453108999899E071-32101
chr6109000853109000893E071-31107
chr6109001650109001834E071-30166
chr6109007267109007399E071-24601
chr6109007466109007540E071-24460
chr6109010201109011356E071-20644
chr6109011542109012015E071-19985
chr6109018935109019096E071-12904
chr6109028632109028829E071-3171
chr6109028861109028919E071-3081
chr6109029374109029445E071-2555
chr6109042270109042397E07110270
chr6109042481109042804E07110481
chr6109042963109043013E07110963
chr6109064930109065041E07132930
chr6109073205109073284E07141205
chr6109073355109073604E07141355
chr6109073682109073801E07141682
chr6109073995109074194E07141995
chr6109074290109074729E07142290
chr6109074891109074941E07142891
chr6109076781109076961E07144781
chr6109077043109077141E07145043
chr6108982628108982998E072-49002
chr6108983051108983109E072-48891
chr6108983306108983412E072-48588
chr6108989161108989681E072-42319
chr6108992045108992166E072-39834
chr6108992211108992283E072-39717
chr6108992438108992572E072-39428
chr6108992644108992698E072-39302
chr6108993041108993091E072-38909
chr6108993096108993239E072-38761
chr6108993960108994054E072-37946
chr6108994902108995133E072-36867
chr6108995383108995470E072-36530
chr6108995674108995855E072-36145
chr6108996410108996473E072-35527
chr6108996576108996740E072-35260
chr6108996895108997188E072-34812
chr6108997191108997398E072-34602
chr6108997679108997760E072-34240
chr6108997907108998086E072-33914
chr6108998266108998306E072-33694
chr6108998650108998731E072-33269
chr6108998787108998873E072-33127
chr6109001650109001834E072-30166
chr6109002175109002229E072-29771
chr6109010001109010063E072-21937
chr6109010201109011356E072-20644
chr6109011542109012015E072-19985
chr6109064930109065041E07232930
chr6109065303109066188E07233303
chr6109066238109066643E07234238
chr6109073355109073604E07241355
chr6109073682109073801E07241682
chr6109073995109074194E07241995
chr6109074290109074729E07242290
chr6108988045108988462E073-43538
chr6108989161108989681E073-42319
chr6108991298108991370E073-40630
chr6108992045108992166E073-39834
chr6108992211108992283E073-39717
chr6108992438108992572E073-39428
chr6108992644108992698E073-39302
chr6108993041108993091E073-38909
chr6108993096108993239E073-38761
chr6108993960108994054E073-37946
chr6108994902108995133E073-36867
chr6108995383108995470E073-36530
chr6108995674108995855E073-36145
chr6108996410108996473E073-35527
chr6108996576108996740E073-35260
chr6108996895108997188E073-34812
chr6108997191108997398E073-34602
chr6108997679108997760E073-34240
chr6108997907108998086E073-33914
chr6108998266108998306E073-33694
chr6108998650108998731E073-33269
chr6108998787108998873E073-33127
chr6108998998108999052E073-32948
chr6108999317108999409E073-32591
chr6109000853109000893E073-31107
chr6109011542109012015E073-19985
chr6109018731109018871E073-13129
chr6109018935109019096E073-12904
chr6109028632109028829E073-3171
chr6109066238109066643E07334238
chr6109073205109073284E07341205
chr6109073355109073604E07341355
chr6109073682109073801E07341682
chr6109073995109074194E07341995
chr6109074290109074729E07342290
chr6109074891109074941E07342891
chr6109076580109076773E07344580
chr6109076781109076961E07344781
chr6109077043109077141E07345043
chr6108982628108982998E074-49002
chr6108983051108983109E074-48891
chr6108983306108983412E074-48588
chr6108988045108988462E074-43538
chr6108989161108989681E074-42319
chr6108990427108990477E074-41523
chr6108991298108991370E074-40630
chr6108992045108992166E074-39834
chr6108992211108992283E074-39717
chr6108992438108992572E074-39428
chr6108992644108992698E074-39302
chr6108993041108993091E074-38909
chr6108993096108993239E074-38761
chr6108994902108995133E074-36867
chr6108995383108995470E074-36530
chr6108995674108995855E074-36145
chr6108996410108996473E074-35527
chr6108996576108996740E074-35260
chr6108996895108997188E074-34812
chr6108997191108997398E074-34602
chr6108997679108997760E074-34240
chr6108997907108998086E074-33914
chr6108998266108998306E074-33694
chr6108998650108998731E074-33269
chr6108998787108998873E074-33127
chr6108998998108999052E074-32948
chr6108999317108999409E074-32591
chr6108999453108999899E074-32101
chr6109000853109000893E074-31107
chr6109010201109011356E074-20644
chr6109011542109012015E074-19985
chr6109028632109028829E074-3171
chr6109035194109035937E0743194
chr6109051862109052525E07419862
chr6109052579109052653E07420579
chr6109064930109065041E07432930
chr6109065303109066188E07433303
chr6109073355109073604E07441355
chr6109073682109073801E07441682
chr6109073995109074194E07441995
chr6109074290109074729E07442290
chr6109066238109066643E08134238
chr6109073995109074194E08141995
chr6109074290109074729E08142290
chr6109074891109074941E08142891
chr6109066238109066643E08234238
chr6109073205109073284E08241205
chr6109073355109073604E08241355
chr6109073682109073801E08241682
chr6109073995109074194E08241995
chr6109074290109074729E08242290
chr6109074891109074941E08242891