rs57350471

Homo sapiens
T>A
LINC01324 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0111 (3328/29976,GnomAD)
A=0130 (3808/29118,TOPMED)
A=0123 (618/5008,1000G)
A=0103 (396/3854,ALSPAC)
A=0105 (390/3708,TWINSUK)
chr3:164802975 (GRCh38.p7) (3q26.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.164802975T>A
GRCh37.p13 chr 3NC_000003.11:g.164520763T>A

Gene: LINC01324, long intergenic non-protein coding RNA 1324(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LINC01324 transcriptNR_126405.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.812A=0.188
1000GenomesAmericanSub694T=0.930A=0.070
1000GenomesEast AsianSub1008T=0.905A=0.095
1000GenomesEuropeSub1006T=0.908A=0.092
1000GenomesGlobalStudy-wide5008T=0.877A=0.123
1000GenomesSouth AsianSub978T=0.870A=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.897A=0.103
The Genome Aggregation DatabaseAfricanSub8720T=0.833A=0.167
The Genome Aggregation DatabaseAmericanSub838T=0.940A=0.060
The Genome Aggregation DatabaseEast AsianSub1620T=0.898A=0.102
The Genome Aggregation DatabaseEuropeSub18496T=0.912A=0.087
The Genome Aggregation DatabaseGlobalStudy-wide29976T=0.889A=0.111
The Genome Aggregation DatabaseOtherSub302T=0.910A=0.090
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.869A=0.130
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.895A=0.105
PMID Title Author Journal
24962325Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.Kapoor MDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs573504712.11E-08alcohol dependence (age at onset)24962325

eQTL of rs57350471 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs57350471 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.