rs5760740

Homo sapiens
C>G
SGSM1 : 3 Prime UTR Variant
Check p-value
SNV (Single Nucleotide Variation)
None (
chr22:24926206 (GRCh38.p7) (22q11.23)
ND
GWASdb2
1   publication(s)
See rs on genome
28 Enhancers around
9 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 22NC_000022.11:g.24926206C>G
GRCh37.p13 chr 22NC_000022.10:g.25322173C>G

Gene: SGSM1, small G protein signaling modulator 1(plus strand)

Molecule type Change Amino acid[Codon] SO Term
SGSM1 transcript variant 2NM_133454.3:c.N/A3 Prime UTR Variant
SGSM1 transcript variant 3NM_001098497.2:c.N/A3 Prime UTR Variant
SGSM1 transcript variant 1NM_001039948.3:c.N/A3 Prime UTR Variant
SGSM1 transcript variant 4NM_001098498.2:c.N/A3 Prime UTR Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
PMID Title Author Journal
19268276Genome-wide association study of smoking initiation and current smoking.Vink JMAm J Hum Genet

P-Value

SNP ID p-value Traits Study
rs57607400.000586nicotine smoking19268276

eQTL of rs5760740 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs5760740 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr222529020425291328E068-30845
chr222529137825291454E068-30719
chr222534610925346983E06823936
chr222535103825351139E06828865
chr222535119225351260E06829019
chr222535149625351572E06829323
chr222536196125362702E06839788
chr222537131225371410E06849139
chr222537143725371550E06849264
chr222537158225371683E06849409
chr222532781625327942E0695643
chr222537158225371683E06949409
chr222532771325327768E0715540
chr222532781625327942E0715643
chr222536181525361934E07139642
chr222536196125362702E07139788
chr222536543725366560E07143264
chr222536890225368983E07146729
chr222536906525369326E07146892
chr222532771325327768E0725540
chr222535149625351572E07229323
chr222537131225371410E07249139
chr222537143725371550E07249264
chr222537158225371683E07249409
chr222535149625351572E07329323
chr222537131225371410E07349139
chr222537143725371550E07349264
chr222537158225371683E07349409





Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr222534793125350669E06725758
chr222534793125350669E06825758
chr222534793125350669E06925758
chr222534793125350669E07025758
chr222534793125350669E07125758
chr222534793125350669E07225758
chr222534793125350669E07325758
chr222534793125350669E07425758
chr222534793125350669E08225758