SNP Detail Info-rs58398985

Sequence Name	Change(s)
GRCh38.p7 chr 3	NC_000003.12:g.175318983dup
GRCh37.p13 chr 3	NC_000003.11:g.175036772dup

Molecule type	Change	Amino acid[Codon]	SO Term
NAALADL2 transcript	NM_207015.2:c.	N/A	Intron Variant
NAALADL2 transcript variant X12	XM_006713560.2:c.	N/A	Intron Variant
NAALADL2 transcript variant X1	XM_011512612.2:c.	N/A	Intron Variant
NAALADL2 transcript variant X2	XM_011512613.1:c.	N/A	Intron Variant
NAALADL2 transcript variant X15	XM_011512615.2:c.	N/A	Intron Variant
NAALADL2 transcript variant X18	XM_011512616.2:c.	N/A	Intron Variant
NAALADL2 transcript variant X19	XM_011512617.2:c.	N/A	Intron Variant
NAALADL2 transcript variant X3	XM_017006070.1:c.	N/A	Intron Variant
NAALADL2 transcript variant X4	XM_017006071.1:c.	N/A	Intron Variant
NAALADL2 transcript variant X5	XM_017006072.1:c.	N/A	Intron Variant
NAALADL2 transcript variant X6	XM_017006073.1:c.	N/A	Intron Variant
NAALADL2 transcript variant X7	XM_017006074.1:c.	N/A	Intron Variant
NAALADL2 transcript variant X8	XM_017006075.1:c.	N/A	Intron Variant
NAALADL2 transcript variant X9	XM_017006076.1:c.	N/A	Intron Variant
NAALADL2 transcript variant X10	XM_017006077.1:c.	N/A	Intron Variant
NAALADL2 transcript variant X11	XM_017006078.1:c.	N/A	Intron Variant
NAALADL2 transcript variant X13	XM_017006079.1:c.	N/A	Intron Variant
NAALADL2 transcript variant X14	XM_017006080.1:c.	N/A	Intron Variant
NAALADL2 transcript variant X16	XM_017006081.1:c.	N/A	Intron Variant
NAALADL2 transcript variant X17	XM_017006082.1:c.	N/A	Intron Variant
NAALADL2 transcript variant X20	XM_017006083.1:c.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	(T)5=0.715	dupT=0.285
1000Genomes	American	Sub	694	(T)5=0.780	dupT=0.220
1000Genomes	East Asian	Sub	1008	(T)5=0.776	dupT=0.224
1000Genomes	Europe	Sub	1006	(T)5=0.778	dupT=0.222
1000Genomes	Global	Study-wide	5008	(T)5=0.778	dupT=0.222
1000Genomes	South Asian	Sub	978	(T)5=0.860	dupT=0.140
The Genome Aggregation Database	African	Sub	8712	(T)5=0.747	dupT=0.253
The Genome Aggregation Database	American	Sub	826	(T)5=0.790	dupT=0.210
The Genome Aggregation Database	East Asian	Sub	1616	(T)5=0.747	dupT=0.253
The Genome Aggregation Database	Europe	Sub	18214	(T)5=0.793	dupT=0.206
The Genome Aggregation Database	Global	Study-wide	29652	(T)5=0.777	dupT=0.222
The Genome Aggregation Database	Other	Sub	284	(T)5=0.830	dupT=0.170

PMID	Title	Author	Journal
29460428	Genomewide Association Study of Alcohol Dependence and Related Traits in a Thai Population.	Gelernter J	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs58398985	4E-06	response to alcohol	29460428

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr3	174987945	174988628	E069	-48144
chr3	174987945	174988628	E070	-48144
chr3	174987945	174988628	E071	-48144
chr3	175056551	175056910	E071	19779
chr3	175064761	175065084	E071	27989
chr3	175064613	175064745	E072	27841
chr3	175064761	175065084	E072	27989
chr3	174987945	174988628	E074	-48144
chr3	175056551	175056910	E074	19779
chr3	175064761	175065084	E074	27989
chr3	174997292	174997503	E081	-39269

rs58398985