SNP Detail Info-rs5922858

Organism: Homo sapiens

Alleles: G>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T=0155 (3216/20639,GnomAD)
T=0205 (774/3775,1000G)
T=0139 (516/3708,TWINSUK)
T=0148 (427/2889,ALSPAC)

Position: chrX:83716000 (GRCh38.p7) (Xq21.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr X	NC_000023.11:g.83716000G>T
GRCh37.p13 chr X	NC_000023.10:g.82971008G>T

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1003	G=0.830	T=0.170
1000Genomes	American	Sub	524	G=0.860	T=0.140
1000Genomes	East Asian	Sub	764	G=0.710	T=0.290
1000Genomes	Europe	Sub	766	G=0.830	T=0.170
1000Genomes	Global	Study-wide	3775	G=0.795	T=0.205
1000Genomes	South Asian	Sub	718	G=0.750	T=0.250
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	2889	G=0.852	T=0.148
The Genome Aggregation Database	African	Sub	5799	G=0.844	T=0.156
The Genome Aggregation Database	American	Sub	609	G=0.870	T=0.130
The Genome Aggregation Database	East Asian	Sub	987	G=0.690	T=0.310
The Genome Aggregation Database	Europe	Sub	13061	G=0.855	T=0.144
The Genome Aggregation Database	Global	Study-wide	20639	G=0.844	T=0.155
The Genome Aggregation Database	Other	Sub	183	G=0.790	T=0.210
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.861	T=0.139

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs5922858	0.00071	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs5922858