rs5927282

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
C==0374 (7469/19956,GnomAD)
C==0204 (769/3775,1000G)
C==0489 (1815/3708,TWINSUK)
C==0470 (1357/2889,ALSPAC)
chrX:34501959 (GRCh38.p7) (Xp21.1)
ND
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr XNC_000023.11:g.34501959C>T
GRCh37.p13 chr XNC_000023.10:g.34520076C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1003C=0.137T=0.863
1000GenomesAmericanSub524C=0.280T=0.720
1000GenomesEast AsianSub764C=0.000T=1.000
1000GenomesEuropeSub766C=0.540T=0.460
1000GenomesGlobalStudy-wide3775C=0.204T=0.796
1000GenomesSouth AsianSub718C=0.100T=0.900
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide2889C=0.470T=0.530
The Genome Aggregation DatabaseAfricanSub5618C=0.169T=0.831
The Genome Aggregation DatabaseAmericanSub586C=0.290T=0.710
The Genome Aggregation DatabaseEast AsianSub1014C=0.002T=0.998
The Genome Aggregation DatabaseEuropeSub12563C=0.498T=0.501
The Genome Aggregation DatabaseGlobalStudy-wide19956C=0.374T=0.625
The Genome Aggregation DatabaseOtherSub175C=0.450T=0.550
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.489T=0.511
PMID Title Author Journal
22488850Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence.Zuo LAm J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs59272829.4E-06alcohol and nictotine co-dependence22488850

eQTL of rs5927282 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs5927282 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.