SNP Detail Info-rs5928439

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0361 (7447/20602,GnomAD)
G=0439 (1658/3775,1000G)
G=0321 (1192/3708,TWINSUK)
G=0321 (927/2889,ALSPAC)

Position: chrX:34162711 (GRCh38.p7) (Xp21.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr X	NC_000023.11:g.34162711A>G
GRCh37.p13 chr X	NC_000023.10:g.34180828A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1003	A=0.621	G=0.379
1000Genomes	American	Sub	524	A=0.520	G=0.480
1000Genomes	East Asian	Sub	764	A=0.470	G=0.530
1000Genomes	Europe	Sub	766	A=0.700	G=0.300
1000Genomes	Global	Study-wide	3775	A=0.561	G=0.439
1000Genomes	South Asian	Sub	718	A=0.450	G=0.550
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	2889	A=0.679	G=0.321
The Genome Aggregation Database	African	Sub	5797	A=0.621	G=0.379
The Genome Aggregation Database	American	Sub	611	A=0.420	G=0.580
The Genome Aggregation Database	East Asian	Sub	1014	A=0.423	G=0.577
The Genome Aggregation Database	Europe	Sub	13000	A=0.673	G=0.326
The Genome Aggregation Database	Global	Study-wide	20602	A=0.638	G=0.361
The Genome Aggregation Database	Other	Sub	180	A=0.620	G=0.380
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.679	G=0.321

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs5928439	0.000758	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs5928439