SNP Detail Info-rs5931118

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0317 (6595/20802,GnomAD)
G==0478 (1806/3775,1000G)
G==0111 (410/3708,TWINSUK)
G==0112 (323/2889,ALSPAC)

Position: chrX:137291555 (GRCh38.p7) (Xq26.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr X	NC_000023.11:g.137291555G>A
GRCh37.p13 chr X	NC_000023.10:g.136373714G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1003	G=0.833	A=0.167
1000Genomes	American	Sub	524	G=0.230	A=0.770
1000Genomes	East Asian	Sub	764	G=0.550	A=0.450
1000Genomes	Europe	Sub	766	G=0.140	A=0.860
1000Genomes	Global	Study-wide	3775	G=0.478	A=0.522
1000Genomes	South Asian	Sub	718	G=0.440	A=0.560
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	2889	G=0.112	A=0.888
The Genome Aggregation Database	African	Sub	5832	G=0.753	A=0.247
The Genome Aggregation Database	American	Sub	612	G=0.210	A=0.790
The Genome Aggregation Database	East Asian	Sub	993	G=0.540	A=0.460
The Genome Aggregation Database	Europe	Sub	13178	G=0.113	A=0.886
The Genome Aggregation Database	Global	Study-wide	20802	G=0.317	A=0.683
The Genome Aggregation Database	Other	Sub	187	G=0.240	A=0.760
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.111	A=0.889

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs5931118	0.00086	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs5931118