rs5937156

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0367 (7037/19159,GnomAD)
A==0465 (1756/3775,1000G)
G=0357 (1322/3708,TWINSUK)
G=0348 (1004/2889,ALSPAC)
chrX:69124471 (GRCh38.p7) (Xq13.1)
AD
GWASdb2
1   publication(s)
See rs on genome
123 Enhancers around
30 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr XNC_000023.11:g.69124471A>G
GRCh37.p13 chr XNC_000023.10:g.68344314A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1003A=0.659G=0.341
1000GenomesAmericanSub524A=0.620G=0.380
1000GenomesEast AsianSub764A=0.120G=0.880
1000GenomesEuropeSub766A=0.650G=0.350
1000GenomesGlobalStudy-wide3775A=0.465G=0.535
1000GenomesSouth AsianSub718A=0.250G=0.750
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide2889A=0.652G=0.348
The Genome Aggregation DatabaseAfricanSub5678A=0.691G=0.309
The Genome Aggregation DatabaseAmericanSub525A=0.620G=0.380
The Genome Aggregation DatabaseEast AsianSub992A=0.070G=0.930
The Genome Aggregation DatabaseEuropeSub11808A=0.653G=0.346
The Genome Aggregation DatabaseGlobalStudy-wide19159A=0.632G=0.367
The Genome Aggregation DatabaseOtherSub156A=0.520G=0.480
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.643G=0.357
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs59371560.00099alcohol dependence20201924

eQTL of rs5937156 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs5937156 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chrX6831663768317203E067-27111
chrX6834894468349038E0674630
chrX6837309468373729E06728780
chrX6837392468374090E06729610
chrX6837439268374449E06730078
chrX6837831768378849E06734003
chrX6837888968378948E06734575
chrX6834894468349038E0684630
chrX6837392468374090E06829610
chrX6834894468349038E0694630
chrX6835618668356505E06911872
chrX6835652568358097E06912211
chrX6837231468372497E06928000
chrX6837249968372640E06928185
chrX6837282668372876E06928512
chrX6837295468373044E06928640
chrX6837309468373729E06928780
chrX6834894468349038E0704630
chrX6835064268350821E0706328
chrX6835101068351060E0706696
chrX6835123368351283E0706919
chrX6835129668351383E0706982
chrX6835185968351991E0707545
chrX6835203768352107E0707723
chrX6835276368352868E0708449
chrX6835294668352996E0708632
chrX6835313768353188E0708823
chrX6835325168353301E0708937
chrX6835331368353364E0708999
chrX6835347068353596E0709156
chrX6835363668354149E0709322
chrX6835415068354236E0709836
chrX6835496968355035E07010655
chrX6835540068355470E07011086
chrX6835581268355894E07011498
chrX6835589668355936E07011582
chrX6835600468356085E07011690
chrX6835652568358097E07012211
chrX6835813968358206E07013825
chrX6835830068358383E07013986
chrX6835845668358743E07014142
chrX6835879168358883E07014477
chrX6835889568358945E07014581
chrX6835934168359381E07015027
chrX6836375268363838E07019438
chrX6836393268363982E07019618
chrX6836436068364535E07020046
chrX6836461068364660E07020296
chrX6836475868364821E07020444
chrX6836490368364957E07020589
chrX6836503468365159E07020720
chrX6836516568365276E07020851
chrX6836542668365476E07021112
chrX6836568668365939E07021372
chrX6836895268369081E07024638
chrX6836940168369818E07025087
chrX6836987468371302E07025560
chrX6837816568378215E07033851
chrX6837831768378849E07034003
chrX6838225668382511E07037942
chrX6838290368382963E07038589
chrX6831649868316552E071-27762
chrX6835064268350821E0716328
chrX6835101068351060E0716696
chrX6835123368351283E0716919
chrX6835129668351383E0716982
chrX6837231468372497E07128000
chrX6837249968372640E07128185
chrX6837282668372876E07128512
chrX6837295468373044E07128640
chrX6837309468373729E07128780
chrX6837392468374090E07129610
chrX6837831768378849E07134003
chrX6837888968378948E07134575
chrX6831663768317203E072-27111
chrX6831740968318055E072-26259
chrX6834894468349038E0724630
chrX6835064268350821E0726328
chrX6835276368352868E0728449
chrX6835294668352996E0728632
chrX6835600468356085E07211690
chrX6835618668356505E07211872
chrX6837249968372640E07228185
chrX6837282668372876E07228512
chrX6837295468373044E07228640
chrX6831740968318055E074-26259
chrX6835618668356505E07411872
chrX6835652568358097E07412211
chrX6832190768321959E081-22355
chrX6832923468330382E081-13932
chrX6833054968330649E081-13665
chrX6834894468349038E0814630
chrX6834935468349437E0815040
chrX6835036768350636E0816053
chrX6835064268350821E0816328
chrX6835101068351060E0816696
chrX6835123368351283E0816919
chrX6835129668351383E0816982
chrX6835185968351991E0817545
chrX6835203768352107E0817723
chrX6835276368352868E0818449
chrX6835294668352996E0818632
chrX6835313768353188E0818823
chrX6835325168353301E0818937
chrX6835331368353364E0818999
chrX6835347068353596E0819156
chrX6835618668356505E08111872
chrX6835652568358097E08112211
chrX6835940568359751E08115091
chrX6836266868362734E08118354
chrX6836274868363006E08118434
chrX6836987468371302E08125560
chrX6837948668379536E08135172
chrX6838181768381867E08137503
chrX6838189368381933E08137579
chrX6839389468394029E08149580
chrX6839404268394209E08149728
chrX6832923468330382E082-13932
chrX6835203768352107E0827723
chrX6835540068355470E08211086
chrX6835600468356085E08211690
chrX6835618668356505E08211872
chrX6838225668382511E08237942









Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chrX6838408368384616E06739769
chrX6838468268384732E06740368
chrX6838480768385771E06740493
chrX6838408368384616E06839769
chrX6838468268384732E06840368
chrX6838480768385771E06840493
chrX6838408368384616E06939769
chrX6838468268384732E06940368
chrX6838480768385771E06940493
chrX6838408368384616E07039769
chrX6838468268384732E07040368
chrX6838480768385771E07040493
chrX6838408368384616E07139769
chrX6838468268384732E07140368
chrX6838480768385771E07140493
chrX6838408368384616E07239769
chrX6838468268384732E07240368
chrX6838480768385771E07240493
chrX6838408368384616E07339769
chrX6838468268384732E07340368
chrX6838480768385771E07340493
chrX6838408368384616E07439769
chrX6838468268384732E07440368
chrX6838480768385771E07440493
chrX6838408368384616E08139769
chrX6838468268384732E08140368
chrX6838480768385771E08140493
chrX6838408368384616E08239769
chrX6838468268384732E08240368
chrX6838480768385771E08240493