rs5964215

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0103 (2153/20776,GnomAD)
C=0164 (620/3775,1000G)
C=0104 (384/3708,TWINSUK)
C=0096 (278/2889,ALSPAC)
chrX:42788753 (GRCh38.p7) (Xp11.3)
AD
GWASdb2
1   publication(s)
See rs on genome
5 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr XNC_000023.11:g.42788753T>C
GRCh37.p13 chr XNC_000023.10:g.42648004T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1003T=0.880C=0.120
1000GenomesAmericanSub524T=0.940C=0.060
1000GenomesEast AsianSub764T=0.670C=0.330
1000GenomesEuropeSub766T=0.880C=0.120
1000GenomesGlobalStudy-wide3775T=0.836C=0.164
1000GenomesSouth AsianSub718T=0.830C=0.170
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide2889T=0.904C=0.096
The Genome Aggregation DatabaseAfricanSub5845T=0.899C=0.101
The Genome Aggregation DatabaseAmericanSub621T=0.940C=0.060
The Genome Aggregation DatabaseEast AsianSub1003T=0.680C=0.320
The Genome Aggregation DatabaseEuropeSub13120T=0.909C=0.090
The Genome Aggregation DatabaseGlobalStudy-wide20776T=0.896C=0.103
The Genome Aggregation DatabaseOtherSub187T=0.890C=0.110
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.896C=0.104
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs59642150.000628alcohol dependence20201924

eQTL of rs5964215 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs5964215 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chrX4269651342696700E06748509
chrX4269673942696795E06748735
chrX4269708342697267E06749079
chrX4269651342696700E07148509
chrX4269673942696795E07148735