SNP Detail Info-rs5964217

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0103 (2150/20850,GnomAD)
A=0151 (569/3775,1000G)
A=0102 (380/3708,TWINSUK)
A=0096 (277/2889,ALSPAC)

Position: chrX:42790277 (GRCh38.p7) (Xp11.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 5 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr X	NC_000023.11:g.42790277G>A
GRCh37.p13 chr X	NC_000023.10:g.42649528G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1003	G=0.880	A=0.120
1000Genomes	American	Sub	524	G=0.940	A=0.060
1000Genomes	East Asian	Sub	764	G=0.730	A=0.270
1000Genomes	Europe	Sub	766	G=0.880	A=0.120
1000Genomes	Global	Study-wide	3775	G=0.849	A=0.151
1000Genomes	South Asian	Sub	718	G=0.830	A=0.170
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	2889	G=0.904	A=0.096
The Genome Aggregation Database	African	Sub	5872	G=0.891	A=0.109
The Genome Aggregation Database	American	Sub	613	G=0.940	A=0.060
The Genome Aggregation Database	East Asian	Sub	999	G=0.730	A=0.270
The Genome Aggregation Database	Europe	Sub	13180	G=0.909	A=0.090
The Genome Aggregation Database	Global	Study-wide	20850	G=0.896	A=0.103
The Genome Aggregation Database	Other	Sub	186	G=0.910	A=0.090
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.898	A=0.102

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs5964217	0.000344	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chrX	42696513	42696700	E067	46985
chrX	42696739	42696795	E067	47211
chrX	42697083	42697267	E067	47555
chrX	42696513	42696700	E071	46985
chrX	42696739	42696795	E071	47211

rs5964217