rs5968205

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
C==0211 (4330/20521,GnomAD)
C==0267 (1009/3775,1000G)
C==0144 (533/3708,TWINSUK)
C==0150 (433/2889,ALSPAC)
chrX:83699482 (GRCh38.p7) (Xq21.1)
AD
GWASCatalog | GWASdb2
2   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr XNC_000023.11:g.83699482C>T
GRCh37.p13 chr XNC_000023.10:g.82954490C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1003C=0.383T=0.617
1000GenomesAmericanSub524C=0.160T=0.840
1000GenomesEast AsianSub764C=0.290T=0.710
1000GenomesEuropeSub766C=0.170T=0.830
1000GenomesGlobalStudy-wide3775C=0.267T=0.733
1000GenomesSouth AsianSub718C=0.260T=0.740
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide2889C=0.150T=0.850
The Genome Aggregation DatabaseAfricanSub5767C=0.336T=0.664
The Genome Aggregation DatabaseAmericanSub596C=0.150T=0.850
The Genome Aggregation DatabaseEast AsianSub988C=0.310T=0.690
The Genome Aggregation DatabaseEuropeSub12985C=0.151T=0.848
The Genome Aggregation DatabaseGlobalStudy-wide20521C=0.211T=0.789
The Genome Aggregation DatabaseOtherSub185C=0.190T=0.810
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.144T=0.856
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res
22064162Genome-wide association study of comorbid depressive syndrome and alcohol dependence.Edwards ACPsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs59682053.00E-06alcohol dependence22064162
rs59682050.00067alcohol dependence20201924

eQTL of rs5968205 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs5968205 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.