rs5980083

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0212 (4312/20259,GnomAD)
T==0162 (611/3775,1000G)
T==0288 (1068/3708,TWINSUK)
T==0282 (814/2889,ALSPAC)
chrX:14961643 (GRCh38.p7) (Xp22.2)
AD
GWASdb2
1   publication(s)
See rs on genome
8 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr XNC_000023.11:g.14961643T>C
GRCh37.p13 chr XNC_000023.10:g.14979765T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1003T=0.080C=0.920
1000GenomesAmericanSub524T=0.150C=0.850
1000GenomesEast AsianSub764T=0.060C=0.940
1000GenomesEuropeSub766T=0.310C=0.690
1000GenomesGlobalStudy-wide3775T=0.162C=0.838
1000GenomesSouth AsianSub718T=0.230C=0.770
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide2889T=0.282C=0.718
The Genome Aggregation DatabaseAfricanSub5699T=0.099C=0.901
The Genome Aggregation DatabaseAmericanSub584T=0.130C=0.870
The Genome Aggregation DatabaseEast AsianSub991T=0.050C=0.950
The Genome Aggregation DatabaseEuropeSub12805T=0.277C=0.722
The Genome Aggregation DatabaseGlobalStudy-wide20259T=0.212C=0.787
The Genome Aggregation DatabaseOtherSub180T=0.340C=0.660
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.288C=0.712
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs59800830.00087alcohol dependence20201924

eQTL of rs5980083 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs5980083 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chrX1494063114940863E067-38902
chrX1493540914935584E068-44181
chrX1496398414964034E069-15731
chrX1493540914935584E071-44181
chrX1494063114940863E072-38902
chrX1495894114959099E074-20666
chrX1495917014959873E074-19892
chrX1501546215015575E07435697