rs6010529

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0014 (426/29976,GnomAD)
G=0021 (616/29114,TOPMED)
G=0016 (81/5008,1000G)
chr22:48781929 (GRCh38.p7) (22q13.32)
AD
GWASdb2
1   publication(s)
See rs on genome
105 Enhancers around
11 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 22NC_000022.11:g.48781929A>G
GRCh37.p13 chr 22NC_000022.10:g.49177741A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.942G=0.058
1000GenomesAmericanSub694A=0.990G=0.010
1000GenomesEast AsianSub1008A=1.000G=0.000
1000GenomesEuropeSub1006A=1.000G=0.000
1000GenomesGlobalStudy-wide5008A=0.984G=0.016
1000GenomesSouth AsianSub978A=1.000G=0.000
The Genome Aggregation DatabaseAfricanSub8722A=0.952G=0.048
The Genome Aggregation DatabaseAmericanSub838A=1.000G=0.000
The Genome Aggregation DatabaseEast AsianSub1620A=1.000G=0.000
The Genome Aggregation DatabaseEuropeSub18494A=0.999G=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29976A=0.985G=0.014
The Genome Aggregation DatabaseOtherSub302A=1.000G=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29114A=0.978G=0.021
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs60105290.000868alcohol dependence21314694

eQTL of rs6010529 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6010529 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr224913617449136218E067-41523
chr224913640649136488E067-41253
chr224913658249136681E067-41060
chr224920189449201948E06824153
chr224920208049202216E06824339
chr224920230649202406E06824565
chr224920247549202535E06824734
chr224922384349224019E06846102
chr224913640649136488E069-41253
chr224913658249136681E069-41060
chr224920208049202216E06924339
chr224920230649202406E06924565
chr224920247549202535E06924734
chr224922489149225318E06947150
chr224917781149177888E07070
chr224917792949178050E070188
chr224917837749178589E070636
chr224917876349179128E0701022
chr224917965049179916E0701909
chr224920050749200892E07022766
chr224920094349201000E07023202
chr224920100449201060E07023263
chr224920125049201300E07023509
chr224920139949201449E07023658
chr224920148049201524E07023739
chr224920189449201948E07024153
chr224920208049202216E07024339
chr224920230649202406E07024565
chr224920247549202535E07024734
chr224921284749213219E07035106
chr224921332449213452E07035583
chr224921670649216756E07038965
chr224921681349216867E07039072
chr224921751149217639E07039770
chr224922045549220647E07042714
chr224922066049220816E07042919
chr224922096649221040E07043225
chr224922104949221127E07043308
chr224922119049221272E07043449
chr224922371649223801E07045975
chr224922384349224019E07046102
chr224920125049201300E07123509
chr224920139949201449E07123658
chr224920148049201524E07123739
chr224920189449201948E07124153
chr224920208049202216E07124339
chr224920230649202406E07124565
chr224920247549202535E07124734
chr224920283849203248E07125097
chr224922371649223801E07145975
chr224922384349224019E07146102
chr224922489149225318E07147150
chr224913538149135504E072-42237
chr224913617449136218E072-41523
chr224913640649136488E072-41253
chr224913658249136681E072-41060
chr224920094349201000E07223202
chr224920100449201060E07223263
chr224920208049202216E07224339
chr224920230649202406E07224565
chr224920247549202535E07224734
chr224920283849203248E07225097
chr224922489149225318E07247150
chr224922104949221127E07343308
chr224922119049221272E07343449
chr224913617449136218E074-41523
chr224920189449201948E07424153
chr224920208049202216E07424339
chr224920230649202406E07424565
chr224920247549202535E07424734
chr224920283849203248E07425097
chr224922489149225318E07447150
chr224917837749178589E081636
chr224917876349179128E0811022
chr224917965049179916E0811909
chr224918253049182590E0814789
chr224918277249183076E0815031
chr224918669049186813E0818949
chr224918682349187184E0819082
chr224920050749200892E08122766
chr224920094349201000E08123202
chr224920100449201060E08123263
chr224920208049202216E08124339
chr224920230649202406E08124565
chr224920247549202535E08124734
chr224920283849203248E08125097
chr224921272649212776E08134985
chr224921284749213219E08135106
chr224921332449213452E08135583
chr224921751149217639E08139770
chr224922045549220647E08142714
chr224922066049220816E08142919
chr224922096649221040E08143225
chr224922104949221127E08143308
chr224922119049221272E08143449
chr224922371649223801E08145975
chr224922384349224019E08146102
chr224917837749178589E082636
chr224917876349179128E0821022
chr224918277249183076E0825031
chr224920050749200892E08222766
chr224920125049201300E08223509
chr224920139949201449E08223658
chr224920148049201524E08223739
chr224922371649223801E08245975










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr224922190849221948E06744167
chr224922215249222202E06744411
chr224922190849221948E06844167
chr224922215249222202E06844411
chr224922239449222434E06844653
chr224922190849221948E07244167
chr224922215249222202E07244411
chr224922239449222434E07244653
chr224922190849221948E07344167
chr224922215249222202E07344411
chr224922239449222434E07344653