rs6021639

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0403 (12073/29946,GnomAD)
T==0435 (12691/29118,TOPMED)
T==0404 (2024/5008,1000G)
T==0397 (1531/3854,ALSPAC)
T==0390 (1446/3708,TWINSUK)
chr20:52027936 (GRCh38.p7) (20q13.2)
AD
GWASdb2
1   publication(s)
See rs on genome
3 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 20NC_000020.11:g.52027936T>C
GRCh37.p13 chr 20NC_000020.10:g.50644475T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.535C=0.465
1000GenomesAmericanSub694T=0.470C=0.530
1000GenomesEast AsianSub1008T=0.216C=0.784
1000GenomesEuropeSub1006T=0.414C=0.586
1000GenomesGlobalStudy-wide5008T=0.404C=0.596
1000GenomesSouth AsianSub978T=0.360C=0.640
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.397C=0.603
The Genome Aggregation DatabaseAfricanSub8714T=0.502C=0.498
The Genome Aggregation DatabaseAmericanSub836T=0.480C=0.520
The Genome Aggregation DatabaseEast AsianSub1620T=0.228C=0.772
The Genome Aggregation DatabaseEuropeSub18476T=0.367C=0.632
The Genome Aggregation DatabaseGlobalStudy-wide29946T=0.403C=0.596
The Genome Aggregation DatabaseOtherSub300T=0.430C=0.570
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.435C=0.564
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.390C=0.610
PMID Title Author Journal
23953852Genome-wide association studies of maximum number of drinks.Pan YJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs60216391.21E-05alcohol consumption23953852

eQTL of rs6021639 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6021639 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr205066421150664261E07019736
chr205066432750665356E07019852
chr205066544550666247E07020970