rs6029379

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0419 (12560/29936,GnomAD)
T==0472 (13752/29118,TOPMED)
T==0486 (2432/5008,1000G)
T==0364 (1401/3854,ALSPAC)
T==0372 (1380/3708,TWINSUK)
chr20:40844475 (GRCh38.p7) (20q12)
ND
GWASdb2
1   publication(s)
See rs on genome
45 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 20NC_000020.11:g.40844475T>C
GRCh37.p13 chr 20NC_000020.10:g.39473115T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.592C=0.408
1000GenomesAmericanSub694T=0.510C=0.490
1000GenomesEast AsianSub1008T=0.554C=0.446
1000GenomesEuropeSub1006T=0.377C=0.623
1000GenomesGlobalStudy-wide5008T=0.486C=0.514
1000GenomesSouth AsianSub978T=0.360C=0.640
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.364C=0.636
The Genome Aggregation DatabaseAfricanSub8718T=0.552C=0.448
The Genome Aggregation DatabaseAmericanSub838T=0.530C=0.470
The Genome Aggregation DatabaseEast AsianSub1610T=0.497C=0.503
The Genome Aggregation DatabaseEuropeSub18470T=0.347C=0.652
The Genome Aggregation DatabaseGlobalStudy-wide29936T=0.419C=0.580
The Genome Aggregation DatabaseOtherSub300T=0.290C=0.710
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.472C=0.527
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.372C=0.628
PMID Title Author Journal
22377092ANAPC1 and SLCO3A1 are associated with nicotine dependence: meta-analysis of genome-wide association studies.Wang KSDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs60293798.08E-05nicotine dependence (smoking)22377092

eQTL of rs6029379 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6029379 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr203949688839497087E06823773
chr203949712439498096E06824009
chr203949812539498570E06825010
chr203949712439498096E06924009
chr203945907639459126E070-13989
chr203945961839459658E070-13457
chr203945970539459846E070-13269
chr203945989339459987E070-13128
chr203946033339460387E070-12728
chr203946058039460634E070-12481
chr203947184739471897E070-1218
chr203947201639472188E070-927
chr203947232039472415E070-700
chr203947249239472542E070-573
chr203947267239472722E070-393
chr203947274639472796E070-319
chr203947284039472898E070-217
chr203947298339473256E0700
chr203947331639473368E070201
chr203947342639473637E070311
chr203947658639476673E0703471
chr203947667439476741E0703559
chr203947704439477608E0703929
chr203947820639478409E0705091
chr203947849639478546E0705381
chr203947963139480145E0706516
chr203948704539487136E07013930
chr203948716639487470E07014051
chr203948768339487767E07014568
chr203948781539487911E07014700
chr203948794239488027E07014827
chr203948811039488217E07014995
chr203949041639490583E07017301
chr203949060039490797E07017485
chr203947232039472415E081-700
chr203947249239472542E081-573
chr203947267239472722E081-393
chr203947274639472796E081-319
chr203947284039472898E081-217
chr203947298339473256E0810
chr203947704439477608E0813929
chr203947963139480145E0816516
chr203948019839480346E0817083
chr203948052939480583E0817414
chr203948685739486978E08213742