rs603404

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
A==0359 (10743/29852,GnomAD)
A==0349 (10170/29116,TOPMED)
A==0441 (2207/5008,1000G)
A==0299 (1153/3854,ALSPAC)
A==0295 (1093/3708,TWINSUK)
chr1:228969398 (GRCh38.p7) (1q42.13)
AD
GWASdb2
2   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.228969398A>G
GRCh37.p13 chr 1NC_000001.10:g.229105145A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.441G=0.559
1000GenomesAmericanSub694A=0.370G=0.630
1000GenomesEast AsianSub1008A=0.610G=0.390
1000GenomesEuropeSub1006A=0.322G=0.678
1000GenomesGlobalStudy-wide5008A=0.441G=0.559
1000GenomesSouth AsianSub978A=0.440G=0.560
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.299G=0.701
The Genome Aggregation DatabaseAfricanSub8678A=0.411G=0.589
The Genome Aggregation DatabaseAmericanSub838A=0.370G=0.630
The Genome Aggregation DatabaseEast AsianSub1612A=0.606G=0.394
The Genome Aggregation DatabaseEuropeSub18422A=0.314G=0.685
The Genome Aggregation DatabaseGlobalStudy-wide29852A=0.359G=0.640
The Genome Aggregation DatabaseOtherSub302A=0.340G=0.660
Trans-Omics for Precision MedicineGlobalStudy-wide29116A=0.349G=0.650
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.295G=0.705
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res
24376456Gene-alcohol interactions identify several novel blood pressure loci including a promising locus near SLC16A9.Simino JFront Genet

P-Value

SNP ID p-value Traits Study
rs6034040.000078alcohol dependence(early age of onset)20201924
rs6034040.0000784alcoholismpha002892
rs6034040.00009alcohol dependence20201924
rs6034040.0000902alcoholismpha002893

eQTL of rs603404 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs603404 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr1229073180229073301E067-31844
chr1229073434229074693E067-30452
chr1229076598229076664E067-28481
chr1229076849229076957E067-28188
chr1229077068229077151E067-27994
chr1229077553229077675E067-27470
chr1229080156229080372E067-24773
chr1229080594229081026E067-24119
chr1229088281229088475E067-16670
chr1229089058229089250E067-15895
chr1229089309229089412E067-15733
chr1229114250229114938E0679105
chr1229115050229115104E0679905
chr1229122094229122305E06716949
chr1229122431229122556E06717286
chr1229122838229122888E06717693
chr1229123037229123090E06717892
chr1229123158229123423E06718013
chr1229124482229124825E06719337
chr1229125168229125332E06720023
chr1229125343229125444E06720198
chr1229125538229125582E06720393
chr1229125680229126730E06720535
chr1229127075229127244E06721930
chr1229137767229138008E06732622
chr1229138442229138508E06733297
chr1229139030229139480E06733885
chr1229139553229139776E06734408
chr1229139824229140005E06734679
chr1229140059229140239E06734914
chr1229073180229073301E068-31844
chr1229073434229074693E068-30452
chr1229076598229076664E068-28481
chr1229080594229081026E068-24119
chr1229088281229088475E068-16670
chr1229089058229089250E068-15895
chr1229089309229089412E068-15733
chr1229114250229114938E0689105
chr1229115050229115104E0689905
chr1229122094229122305E06816949
chr1229122431229122556E06817286
chr1229124482229124825E06819337
chr1229125168229125332E06820023
chr1229125343229125444E06820198
chr1229125538229125582E06820393
chr1229125680229126730E06820535
chr1229128222229128321E06823077
chr1229137348229137620E06832203
chr1229137767229138008E06832622
chr1229138442229138508E06833297
chr1229139030229139480E06833885
chr1229139553229139776E06834408
chr1229139824229140005E06834679
chr1229140059229140239E06834914
chr1229141120229141201E06835975
chr1229141369229141439E06836224
chr1229142034229142109E06836889
chr1229073180229073301E069-31844
chr1229073434229074693E069-30452
chr1229074822229074932E069-30213
chr1229076598229076664E069-28481
chr1229076849229076957E069-28188
chr1229077068229077151E069-27994
chr1229080594229081026E069-24119
chr1229088281229088475E069-16670
chr1229089058229089250E069-15895
chr1229114250229114938E0699105
chr1229115050229115104E0699905
chr1229119538229119617E06914393
chr1229122094229122305E06916949
chr1229122431229122556E06917286
chr1229122838229122888E06917693
chr1229123037229123090E06917892
chr1229123158229123423E06918013
chr1229123736229123786E06918591
chr1229124482229124825E06919337
chr1229125168229125332E06920023
chr1229125343229125444E06920198
chr1229125538229125582E06920393
chr1229125680229126730E06920535
chr1229127075229127244E06921930
chr1229128222229128321E06923077
chr1229128691229129277E06923546
chr1229134140229134227E06928995
chr1229138442229138508E06933297
chr1229139030229139480E06933885
chr1229139553229139776E06934408
chr1229139824229140005E06934679
chr1229140059229140239E06934914
chr1229141120229141201E06935975
chr1229141369229141439E06936224
chr1229122431229122556E07017286
chr1229122838229122888E07017693
chr1229123037229123090E07017892
chr1229123158229123423E07018013
chr1229123736229123786E07018591
chr1229124108229124225E07018963
chr1229139030229139480E07033885
chr1229139553229139776E07034408
chr1229071815229072229E071-32916
chr1229072380229072441E071-32704
chr1229072452229072511E071-32634
chr1229073180229073301E071-31844
chr1229073434229074693E071-30452
chr1229075840229075969E071-29176
chr1229076598229076664E071-28481
chr1229076849229076957E071-28188
chr1229077068229077151E071-27994
chr1229080156229080372E071-24773
chr1229080594229081026E071-24119
chr1229089058229089250E071-15895
chr1229104590229105074E071-71
chr1229105140229105292E0710
chr1229114250229114938E0719105
chr1229115050229115104E0719905
chr1229115228229115417E07110083
chr1229115486229115536E07110341
chr1229122094229122305E07116949
chr1229122431229122556E07117286
chr1229122838229122888E07117693
chr1229123037229123090E07117892
chr1229123158229123423E07118013
chr1229123736229123786E07118591
chr1229124108229124225E07118963
chr1229124482229124825E07119337
chr1229125168229125332E07120023
chr1229125343229125444E07120198
chr1229125538229125582E07120393
chr1229125680229126730E07120535
chr1229127075229127244E07121930
chr1229128222229128321E07123077
chr1229128691229129277E07123546
chr1229134140229134227E07128995
chr1229137055229137242E07131910
chr1229137348229137620E07132203
chr1229137767229138008E07132622
chr1229138442229138508E07133297
chr1229139030229139480E07133885
chr1229139553229139776E07134408
chr1229139824229140005E07134679
chr1229140059229140239E07134914
chr1229141120229141201E07135975
chr1229141369229141439E07136224
chr1229142034229142109E07136889
chr1229142343229142479E07137198
chr1229073180229073301E072-31844
chr1229073434229074693E072-30452
chr1229076598229076664E072-28481
chr1229076849229076957E072-28188
chr1229077068229077151E072-27994
chr1229079590229079787E072-25358
chr1229080156229080372E072-24773
chr1229080594229081026E072-24119
chr1229088281229088475E072-16670
chr1229089058229089250E072-15895
chr1229114250229114938E0729105
chr1229115050229115104E0729905
chr1229115228229115417E07210083
chr1229115486229115536E07210341
chr1229122094229122305E07216949
chr1229122431229122556E07217286
chr1229122838229122888E07217693
chr1229123037229123090E07217892
chr1229123158229123423E07218013
chr1229123736229123786E07218591
chr1229124482229124825E07219337
chr1229125168229125332E07220023
chr1229125343229125444E07220198
chr1229125538229125582E07220393
chr1229125680229126730E07220535
chr1229128222229128321E07223077
chr1229138442229138508E07233297
chr1229139030229139480E07233885
chr1229139553229139776E07234408
chr1229139824229140005E07234679
chr1229140059229140239E07234914
chr1229141120229141201E07235975
chr1229151415229151926E07246270
chr1229073180229073301E073-31844
chr1229073434229074693E073-30452
chr1229076849229076957E073-28188
chr1229077068229077151E073-27994
chr1229105140229105292E0730
chr1229114250229114938E0739105
chr1229115050229115104E0739905
chr1229122094229122305E07316949
chr1229122431229122556E07317286
chr1229122838229122888E07317693
chr1229123037229123090E07317892
chr1229123158229123423E07318013
chr1229123736229123786E07318591
chr1229124482229124825E07319337
chr1229125168229125332E07320023
chr1229125343229125444E07320198
chr1229125538229125582E07320393
chr1229125680229126730E07320535
chr1229139553229139776E07334408
chr1229139824229140005E07334679
chr1229140059229140239E07334914
chr1229141120229141201E07335975
chr1229141369229141439E07336224
chr1229071815229072229E074-32916
chr1229072380229072441E074-32704
chr1229072452229072511E074-32634
chr1229073180229073301E074-31844
chr1229073434229074693E074-30452
chr1229074822229074932E074-30213
chr1229076598229076664E074-28481
chr1229076849229076957E074-28188
chr1229077068229077151E074-27994
chr1229079485229079545E074-25600
chr1229079590229079787E074-25358
chr1229080156229080372E074-24773
chr1229080594229081026E074-24119
chr1229088281229088475E074-16670
chr1229089058229089250E074-15895
chr1229089309229089412E074-15733
chr1229114250229114938E0749105
chr1229122094229122305E07416949
chr1229122431229122556E07417286
chr1229122838229122888E07417693
chr1229123037229123090E07417892
chr1229123158229123423E07418013
chr1229123736229123786E07418591
chr1229124108229124225E07418963
chr1229124482229124825E07419337
chr1229125168229125332E07420023
chr1229125343229125444E07420198
chr1229125538229125582E07420393
chr1229125680229126730E07420535
chr1229127075229127244E07421930
chr1229128222229128321E07423077
chr1229128691229129277E07423546
chr1229134140229134227E07428995
chr1229137055229137242E07431910
chr1229137348229137620E07432203
chr1229137767229138008E07432622
chr1229138442229138508E07433297
chr1229139030229139480E07433885
chr1229139553229139776E07434408
chr1229141120229141201E07435975
chr1229141369229141439E07436224
chr1229063260229063607E081-41538
chr1229063665229064283E081-40862
chr1229122094229122305E08116949
chr1229122431229122556E08117286
chr1229122838229122888E08117693
chr1229123037229123090E08117892
chr1229123158229123423E08118013
chr1229123736229123786E08118591
chr1229124108229124225E08118963
chr1229124482229124825E08119337
chr1229125680229126730E08120535
chr1229127075229127244E08121930
chr1229128222229128321E08123077
chr1229128691229129277E08123546
chr1229135625229135821E08130480
chr1229139030229139480E08133885
chr1229139553229139776E08134408
chr1229139824229140005E08134679
chr1229140059229140239E08134914
chr1229141369229141439E08136224
chr1229114135229114190E0828990
chr1229119538229119617E08214393
chr1229122094229122305E08216949
chr1229122431229122556E08217286
chr1229122838229122888E08217693
chr1229123037229123090E08217892
chr1229123158229123423E08218013
chr1229123736229123786E08218591
chr1229125680229126730E08220535
chr1229128222229128321E08223077
chr1229134868229134964E08229723
chr1229134970229135072E08229825
chr1229135142229135615E08229997
chr1229135625229135821E08230480