SNP Detail Info-rs6049811

Molecule type	Change	Amino acid[Codon]	SO Term
SYNDIG1 transcript variant 2	NM_001323606.1:c.	N/A	Intron Variant
SYNDIG1 transcript variant 3	NM_001323607.1:c.	N/A	Intron Variant
SYNDIG1 transcript variant 1	NM_024893.2:c.	N/A	Intron Variant
SYNDIG1 transcript variant X1	XM_011529347.2:c.	N/A	Intron Variant
SYNDIG1 transcript variant X2	XM_011529348.2:c.	N/A	Intron Variant
SYNDIG1 transcript variant X3	XM_011529349.2:c.	N/A	Intron Variant
SYNDIG1 transcript variant X4	XM_011529350.1:c.	N/A	Intron Variant
SYNDIG1 transcript variant X5	XM_011529351.1:c.	N/A	Intron Variant
SYNDIG1 transcript variant X6	XM_011529352.2:c.	N/A	Intron Variant
SYNDIG1 transcript variant X8	XM_011529353.2:c.	N/A	Intron Variant
SYNDIG1 transcript variant X7	XM_011529354.2:c.	N/A	Intron Variant
SYNDIG1 transcript variant X16	XM_011529356.2:c.	N/A	Intron Variant
SYNDIG1 transcript variant X17	XM_011529358.2:c.	N/A	Intron Variant
SYNDIG1 transcript variant X9	XM_017028064.1:c.	N/A	Intron Variant
SYNDIG1 transcript variant X10	XM_017028065.1:c.	N/A	Intron Variant
SYNDIG1 transcript variant X11	XM_017028066.1:c.	N/A	Intron Variant
SYNDIG1 transcript variant X12	XM_017028067.1:c.	N/A	Intron Variant
SYNDIG1 transcript variant X13	XM_017028068.1:c.	N/A	Intron Variant
SYNDIG1 transcript variant X18	XM_017028069.1:c.	N/A	Genic Downstream Transcript Variant
SYNDIG1 transcript variant X15	XR_001754402.1:n.	N/A	Intron Variant
SYNDIG1 transcript variant X14	XR_937144.2:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.848	G=0.152
1000Genomes	American	Sub	694	T=0.560	G=0.440
1000Genomes	East Asian	Sub	1008	T=0.804	G=0.196
1000Genomes	Europe	Sub	1006	T=0.636	G=0.364
1000Genomes	Global	Study-wide	5008	T=0.716	G=0.284
1000Genomes	South Asian	Sub	978	T=0.640	G=0.360
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.624	G=0.376
The Genome Aggregation Database	African	Sub	8706	T=0.786	G=0.214
The Genome Aggregation Database	American	Sub	838	T=0.470	G=0.53,
The Genome Aggregation Database	East Asian	Sub	1618	T=0.833	G=0.167
The Genome Aggregation Database	Europe	Sub	18472	T=0.646	G=0.354
The Genome Aggregation Database	Global	Study-wide	29936	T=0.693	G=0.307
The Genome Aggregation Database	Other	Sub	302	T=0.750	G=0.25,
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.720	G=0.279
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.631	G=0.369

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs6049811	0.000971	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs6049811