rs60617249

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0464 (13887/29928,GnomAD)
G=0479 (13949/29118,TOPMED)
A==0462 (2315/5008,1000G)
G=0405 (1559/3854,ALSPAC)
G=0390 (1447/3708,TWINSUK)
chr7:50944161 (GRCh38.p7) (7p12.1)
AD
GWASCatalog
1   publication(s)
See rs on genome
21 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.50944161A>G
GRCh37.p13 chr 7NC_000007.13:g.51011858A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.382G=0.618
1000GenomesAmericanSub694A=0.610G=0.390
1000GenomesEast AsianSub1008A=0.411G=0.589
1000GenomesEuropeSub1006A=0.563G=0.437
1000GenomesGlobalStudy-wide5008A=0.462G=0.538
1000GenomesSouth AsianSub978A=0.410G=0.590
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.595G=0.405
The Genome Aggregation DatabaseAfricanSub8712A=0.441G=0.559
The Genome Aggregation DatabaseAmericanSub838A=0.600G=0.400
The Genome Aggregation DatabaseEast AsianSub1610A=0.443G=0.557
The Genome Aggregation DatabaseEuropeSub18466A=0.585G=0.414
The Genome Aggregation DatabaseGlobalStudy-wide29928A=0.536G=0.464
The Genome Aggregation DatabaseOtherSub302A=0.560G=0.440
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.520G=0.479
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.610G=0.390
PMID Title Author Journal
29071344Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.Zhou HJAMA Psychiatry

P-Value

SNP ID p-value Traits Study
rs606172494E-06alcohol dependence29071344

eQTL of rs60617249 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs60617249 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr75103041551031117E06818557
chr75103009051030312E06918232
chr75103041551031117E06918557
chr75103009051030312E07018232
chr75103041551031117E07018557
chr75105097351051065E07039115
chr75105138251051866E07039524
chr75105193651052123E07040078
chr75103009051030312E07118232
chr75103041551031117E07118557
chr75098295850983008E081-28850
chr75098343250983675E081-28183
chr75098399950984043E081-27815
chr75098404950984119E081-27739
chr75098434350984415E081-27443
chr75098848850988611E081-23247
chr75098891150989402E081-22456
chr75105097351051065E08139115
chr75105138251051866E08139524
chr75105138251051866E08239524
chr75105193651052123E08240078