SNP Detail Info-rs6071447

Organism: Homo sapiens

Alleles: C>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T=0178 (5337/29866,GnomAD)
T=0166 (4859/29118,TOPMED)
T=0104 (519/5008,1000G)
T=0264 (1017/3854,ALSPAC)
T=0273 (1012/3708,TWINSUK)

Position: chr20:60949614 (GRCh38.p7) (20q13.33)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 20 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 20	NC_000020.11:g.60949614C>T
GRCh37.p13 chr 20	NC_000020.10:g.59524670C>T

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.979	T=0.021
1000Genomes	American	Sub	694	C=0.840	T=0.160
1000Genomes	East Asian	Sub	1008	C=0.988	T=0.012
1000Genomes	Europe	Sub	1006	C=0.741	T=0.259
1000Genomes	Global	Study-wide	5008	C=0.896	T=0.104
1000Genomes	South Asian	Sub	978	C=0.890	T=0.110
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.736	T=0.264
The Genome Aggregation Database	African	Sub	8700	C=0.950	T=0.050
The Genome Aggregation Database	American	Sub	834	C=0.820	T=0.180
The Genome Aggregation Database	East Asian	Sub	1616	C=0.982	T=0.018
The Genome Aggregation Database	Europe	Sub	18416	C=0.748	T=0.251
The Genome Aggregation Database	Global	Study-wide	29866	C=0.821	T=0.178
The Genome Aggregation Database	Other	Sub	300	C=0.690	T=0.310
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.833	T=0.166
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.727	T=0.273

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs6071447	0.00098	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr20	59565054	59565179	E068	40384
chr20	59565221	59565380	E068	40551
chr20	59565935	59565989	E068	41265
chr20	59536268	59536380	E070	11598
chr20	59552803	59553295	E070	28133
chr20	59553303	59553756	E070	28633
chr20	59551631	59551749	E081	26961
chr20	59552000	59552093	E081	27330
chr20	59552101	59552198	E081	27431
chr20	59552277	59552388	E081	27607
chr20	59552483	59552552	E081	27813
chr20	59552803	59553295	E081	28133
chr20	59553303	59553756	E081	28633
chr20	59561365	59561415	E081	36695
chr20	59561624	59561954	E081	36954
chr20	59568565	59568729	E081	43895
chr20	59568836	59568978	E081	44166
chr20	59552483	59552552	E082	27813
chr20	59552803	59553295	E082	28133
chr20	59553303	59553756	E082	28633

rs6071447