rs6071447

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0178 (5337/29866,GnomAD)
T=0166 (4859/29118,TOPMED)
T=0104 (519/5008,1000G)
T=0264 (1017/3854,ALSPAC)
T=0273 (1012/3708,TWINSUK)
chr20:60949614 (GRCh38.p7) (20q13.33)
AD
GWASdb2
1   publication(s)
See rs on genome
20 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 20NC_000020.11:g.60949614C>T
GRCh37.p13 chr 20NC_000020.10:g.59524670C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.979T=0.021
1000GenomesAmericanSub694C=0.840T=0.160
1000GenomesEast AsianSub1008C=0.988T=0.012
1000GenomesEuropeSub1006C=0.741T=0.259
1000GenomesGlobalStudy-wide5008C=0.896T=0.104
1000GenomesSouth AsianSub978C=0.890T=0.110
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.736T=0.264
The Genome Aggregation DatabaseAfricanSub8700C=0.950T=0.050
The Genome Aggregation DatabaseAmericanSub834C=0.820T=0.180
The Genome Aggregation DatabaseEast AsianSub1616C=0.982T=0.018
The Genome Aggregation DatabaseEuropeSub18416C=0.748T=0.251
The Genome Aggregation DatabaseGlobalStudy-wide29866C=0.821T=0.178
The Genome Aggregation DatabaseOtherSub300C=0.690T=0.310
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.833T=0.166
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.727T=0.273
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs60714470.00098alcohol dependence20201924

eQTL of rs6071447 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6071447 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr205956505459565179E06840384
chr205956522159565380E06840551
chr205956593559565989E06841265
chr205953626859536380E07011598
chr205955280359553295E07028133
chr205955330359553756E07028633
chr205955163159551749E08126961
chr205955200059552093E08127330
chr205955210159552198E08127431
chr205955227759552388E08127607
chr205955248359552552E08127813
chr205955280359553295E08128133
chr205955330359553756E08128633
chr205956136559561415E08136695
chr205956162459561954E08136954
chr205956856559568729E08143895
chr205956883659568978E08144166
chr205955248359552552E08227813
chr205955280359553295E08228133
chr205955330359553756E08228633