| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 20 | NC_000020.11:g.16125395A>G |
| GRCh37.p13 chr 20 | NC_000020.10:g.16106040A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.368 | G=0.632 |
| 1000Genomes | American | Sub | 694 | A=0.480 | G=0.520 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.149 | G=0.851 |
| 1000Genomes | Europe | Sub | 1006 | A=0.629 | G=0.371 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.442 | G=0.558 |
| 1000Genomes | South Asian | Sub | 978 | A=0.630 | G=0.370 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.656 | G=0.344 |
| The Genome Aggregation Database | African | Sub | 8710 | A=0.402 | G=0.598 |
| The Genome Aggregation Database | American | Sub | 836 | A=0.450 | G=0.550 |
| The Genome Aggregation Database | East Asian | Sub | 1616 | A=0.157 | G=0.843 |
| The Genome Aggregation Database | Europe | Sub | 18484 | A=0.658 | G=0.341 |
| The Genome Aggregation Database | Global | Study-wide | 29948 | A=0.550 | G=0.449 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.660 | G=0.340 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.494 | G=0.505 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.637 | G=0.363 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs6080131 | 0.000816 | alcohol dependence | 20201924 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr20 | 16087819 | 16088644 | E069 | -17396 |
| chr20 | 16092095 | 16092196 | E069 | -13844 |
| chr20 | 16111088 | 16111645 | E069 | 5048 |
| chr20 | 16087661 | 16087740 | E071 | -18300 |
| chr20 | 16087819 | 16088644 | E071 | -17396 |
| chr20 | 16087819 | 16088644 | E073 | -17396 |
| chr20 | 16087661 | 16087740 | E074 | -18300 |
| chr20 | 16087819 | 16088644 | E074 | -17396 |