rs6091723

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0381 (11416/29938,GnomAD)
A=0397 (11563/29118,TOPMED)
A=0317 (1588/5008,1000G)
A=0395 (1524/3854,ALSPAC)
A=0406 (1505/3708,TWINSUK)
chr20:53661719 (GRCh38.p7) (20q13.2)
AD
GWASdb2
1   publication(s)
See rs on genome
45 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 20NC_000020.11:g.53661719G>A
GRCh37.p13 chr 20NC_000020.10:g.52278258G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.547A=0.453
1000GenomesAmericanSub694G=0.750A=0.250
1000GenomesEast AsianSub1008G=0.859A=0.141
1000GenomesEuropeSub1006G=0.642A=0.358
1000GenomesGlobalStudy-wide5008G=0.683A=0.317
1000GenomesSouth AsianSub978G=0.680A=0.320
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.605A=0.395
The Genome Aggregation DatabaseAfricanSub8714G=0.551A=0.449
The Genome Aggregation DatabaseAmericanSub836G=0.710A=0.290
The Genome Aggregation DatabaseEast AsianSub1614G=0.867A=0.133
The Genome Aggregation DatabaseEuropeSub18472G=0.624A=0.375
The Genome Aggregation DatabaseGlobalStudy-wide29938G=0.618A=0.381
The Genome Aggregation DatabaseOtherSub302G=0.600A=0.400
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.602A=0.397
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.594A=0.406
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs60917230.000163alcohol dependence21314694

eQTL of rs6091723 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6091723 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr205226851852270150E067-8108
chr205227590952278591E0670
chr205229541352297022E06717155
chr205223789652241022E068-37236
chr205226851852270150E068-8108
chr205227383852274030E068-4228
chr205227412052274297E068-3961
chr205229399752295181E06815739
chr205229519752295403E06816939
chr205229541352297022E06817155
chr205232140752321600E06843149
chr205232265052325422E06844392
chr205223789652241022E069-37236
chr205226851852270150E069-8108
chr205229399752295181E06915739
chr205229519752295403E06916939
chr205229541352297022E06917155
chr205229716652297444E06918908
chr205223614152236504E070-41754
chr205223656052236655E070-41603
chr205223789652241022E070-37236
chr205227590952278591E0700
chr205229399752295181E07015739
chr205229519752295403E07016939
chr205229541352297022E07017155
chr205223789652241022E071-37236
chr205226851852270150E071-8108
chr205227590952278591E0710
chr205229519752295403E07116939
chr205229541352297022E07117155
chr205229716652297444E07118908
chr205232265052325422E07144392
chr205229399752295181E07215739
chr205229519752295403E07216939
chr205227590952278591E0730
chr205229716652297444E07318908
chr205229744852297512E07319190
chr205226851852270150E074-8108
chr205227590952278591E0740
chr205229399752295181E07415739
chr205229519752295403E07416939
chr205229541352297022E07417155
chr205232265052325422E07444392
chr205229399752295181E08115739
chr205223789652241022E082-37236