rs6120401

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0198 (5937/29878,GnomAD)
T=0193 (5639/29118,TOPMED)
T=0281 (1409/5008,1000G)
T=0165 (634/3854,ALSPAC)
T=0167 (619/3708,TWINSUK)
chr20:33879333 (GRCh38.p7) (20q11.22)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 20NC_000020.11:g.33879333C>T
GRCh37.p13 chr 20NC_000020.10:g.32467139C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.811T=0.189
1000GenomesAmericanSub694C=0.840T=0.160
1000GenomesEast AsianSub1008C=0.389T=0.611
1000GenomesEuropeSub1006C=0.819T=0.181
1000GenomesGlobalStudy-wide5008C=0.719T=0.281
1000GenomesSouth AsianSub978C=0.750T=0.250
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.835T=0.165
The Genome Aggregation DatabaseAfricanSub8698C=0.801T=0.199
The Genome Aggregation DatabaseAmericanSub836C=0.830T=0.170
The Genome Aggregation DatabaseEast AsianSub1602C=0.450T=0.550
The Genome Aggregation DatabaseEuropeSub18440C=0.830T=0.169
The Genome Aggregation DatabaseGlobalStudy-wide29878C=0.801T=0.198
The Genome Aggregation DatabaseOtherSub302C=0.790T=0.210
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.806T=0.193
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.833T=0.167
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs61204010.000618alcohol dependence21314694

eQTL of rs6120401 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6120401 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr203241748332417533E067-49606
chr203241762732418560E067-48579
chr203241980032420547E067-46592
chr203242067132420734E067-46405
chr203242082932420954E067-46185
chr203242104732421157E067-45982
chr203242119632421776E067-45363
chr203242577332426324E067-40815
chr203242634432426375E067-40764
chr203242642832426780E067-40359
chr203242683832426928E067-40211
chr203242699132427083E067-40056
chr203242713132427286E067-39853
chr203242737832427732E067-39407
chr203242784332427912E067-39227
chr203242819632428246E067-38893
chr203242831832428427E067-38712
chr203242852132428834E067-38305
chr203242886232429297E067-37842
chr203242935632429664E067-37475
chr203242967432429820E067-37319
chr203243012432430746E067-36393
chr203243075232430834E067-36305
chr203243084732431011E067-36128
chr203243102532431186E067-35953
chr203243147932431533E067-35606
chr203243153932432083E067-35056
chr203243356132433751E067-33388
chr203243376732433918E067-33221
chr203243404432434116E067-33023
chr203243415532434278E067-32861
chr203243428132434790E067-32349
chr203243479232435276E067-31863
chr203243527832435328E067-31811
chr203244754432447889E067-19250
chr203244789732448100E067-19039
chr203241748332417533E068-49606
chr203241762732418560E068-48579
chr203241957332419730E068-47409
chr203242082932420954E068-46185
chr203242104732421157E068-45982
chr203242119632421776E068-45363
chr203242358832423862E068-43277
chr203242387232423949E068-43190
chr203242515932425203E068-41936
chr203242528932425644E068-41495
chr203242577332426324E068-40815
chr203242634432426375E068-40764
chr203242642832426780E068-40359
chr203242683832426928E068-40211
chr203242699132427083E068-40056
chr203242713132427286E068-39853
chr203242737832427732E068-39407
chr203242784332427912E068-39227
chr203242819632428246E068-38893
chr203242831832428427E068-38712
chr203242852132428834E068-38305
chr203242886232429297E068-37842
chr203242935632429664E068-37475
chr203242967432429820E068-37319
chr203243012432430746E068-36393
chr203243075232430834E068-36305
chr203243084732431011E068-36128
chr203243102532431186E068-35953
chr203243147932431533E068-35606
chr203243153932432083E068-35056
chr203243415532434278E068-32861
chr203243428132434790E068-32349
chr203245036732451290E068-15849
chr203241748332417533E069-49606
chr203241762732418560E069-48579
chr203241957332419730E069-47409
chr203242104732421157E069-45982
chr203242119632421776E069-45363
chr203242528932425644E069-41495
chr203242577332426324E069-40815
chr203242634432426375E069-40764
chr203242642832426780E069-40359
chr203242683832426928E069-40211
chr203242699132427083E069-40056
chr203242713132427286E069-39853
chr203242819632428246E069-38893
chr203242831832428427E069-38712
chr203242852132428834E069-38305
chr203242886232429297E069-37842
chr203242935632429664E069-37475
chr203242967432429820E069-37319
chr203243012432430746E069-36393
chr203243075232430834E069-36305
chr203243084732431011E069-36128
chr203243102532431186E069-35953
chr203243376732433918E069-33221
chr203243404432434116E069-33023
chr203243415532434278E069-32861
chr203243428132434790E069-32349
chr203245036732451290E069-15849
chr203241762732418560E070-48579
chr203241957332419730E070-47409
chr203241980032420547E070-46592
chr203242067132420734E070-46405
chr203242082932420954E070-46185
chr203242104732421157E070-45982
chr203242119632421776E070-45363
chr203242197232422039E070-45100
chr203242642832426780E070-40359
chr203242683832426928E070-40211
chr203242699132427083E070-40056
chr203242713132427286E070-39853
chr203242737832427732E070-39407
chr203242819632428246E070-38893
chr203242831832428427E070-38712
chr203242935632429664E070-37475
chr203242967432429820E070-37319
chr203243012432430746E070-36393
chr203243075232430834E070-36305
chr203243084732431011E070-36128
chr203243102532431186E070-35953
chr203243147932431533E070-35606
chr203243153932432083E070-35056
chr203243222132432271E070-34868
chr203245036732451290E070-15849
chr203241748332417533E071-49606
chr203241762732418560E071-48579
chr203241931532419380E071-47759
chr203241957332419730E071-47409
chr203241980032420547E071-46592
chr203242104732421157E071-45982
chr203242119632421776E071-45363
chr203242358832423862E071-43277
chr203242387232423949E071-43190
chr203242441432424662E071-42477
chr203242475332424803E071-42336
chr203242495932425076E071-42063
chr203242515932425203E071-41936
chr203242528932425644E071-41495
chr203242577332426324E071-40815
chr203242634432426375E071-40764
chr203242642832426780E071-40359
chr203242683832426928E071-40211
chr203242699132427083E071-40056
chr203242713132427286E071-39853
chr203242737832427732E071-39407
chr203242784332427912E071-39227
chr203242819632428246E071-38893
chr203242831832428427E071-38712
chr203242852132428834E071-38305
chr203242886232429297E071-37842
chr203242935632429664E071-37475
chr203242967432429820E071-37319
chr203243012432430746E071-36393
chr203243075232430834E071-36305
chr203243084732431011E071-36128
chr203243102532431186E071-35953
chr203243147932431533E071-35606
chr203243153932432083E071-35056
chr203243404432434116E071-33023
chr203243415532434278E071-32861
chr203243428132434790E071-32349
chr203243479232435276E071-31863
chr203243527832435328E071-31811
chr203245036732451290E071-15849
chr203245882232458980E071-8159
chr203245931232459432E071-7707
chr203241748332417533E072-49606
chr203241762732418560E072-48579
chr203241957332419730E072-47409
chr203241980032420547E072-46592
chr203242067132420734E072-46405
chr203242082932420954E072-46185
chr203242104732421157E072-45982
chr203242387232423949E072-43190
chr203242441432424662E072-42477
chr203242475332424803E072-42336
chr203242495932425076E072-42063
chr203242515932425203E072-41936
chr203242528932425644E072-41495
chr203242577332426324E072-40815
chr203242634432426375E072-40764
chr203242642832426780E072-40359
chr203242683832426928E072-40211
chr203242699132427083E072-40056
chr203242713132427286E072-39853
chr203242737832427732E072-39407
chr203242784332427912E072-39227
chr203242819632428246E072-38893
chr203242831832428427E072-38712
chr203242852132428834E072-38305
chr203242886232429297E072-37842
chr203242935632429664E072-37475
chr203242967432429820E072-37319
chr203243012432430746E072-36393
chr203243075232430834E072-36305
chr203243084732431011E072-36128
chr203243428132434790E072-32349
chr203243479232435276E072-31863
chr203243527832435328E072-31811
chr203244689032447506E072-19633
chr203244754432447889E072-19250
chr203244789732448100E072-19039
chr203245931232459432E072-7707
chr203241748332417533E073-49606
chr203241762732418560E073-48579
chr203241980032420547E073-46592
chr203242119632421776E073-45363
chr203242683832426928E073-40211
chr203242699132427083E073-40056
chr203242713132427286E073-39853
chr203242737832427732E073-39407
chr203242784332427912E073-39227
chr203242819632428246E073-38893
chr203242831832428427E073-38712
chr203242852132428834E073-38305
chr203242886232429297E073-37842
chr203242935632429664E073-37475
chr203242967432429820E073-37319
chr203243012432430746E073-36393
chr203243075232430834E073-36305
chr203243084732431011E073-36128
chr203243376732433918E073-33221
chr203243404432434116E073-33023
chr203243415532434278E073-32861
chr203243428132434790E073-32349
chr203245036732451290E073-15849
chr203241748332417533E074-49606
chr203241762732418560E074-48579
chr203241957332419730E074-47409
chr203241980032420547E074-46592
chr203242082932420954E074-46185
chr203242104732421157E074-45982
chr203242119632421776E074-45363
chr203242197232422039E074-45100
chr203242358832423862E074-43277
chr203242387232423949E074-43190
chr203242577332426324E074-40815
chr203242634432426375E074-40764
chr203242642832426780E074-40359
chr203242683832426928E074-40211
chr203242699132427083E074-40056
chr203242713132427286E074-39853
chr203242737832427732E074-39407
chr203242784332427912E074-39227
chr203242819632428246E074-38893
chr203242831832428427E074-38712
chr203242852132428834E074-38305
chr203242886232429297E074-37842
chr203242935632429664E074-37475
chr203242967432429820E074-37319
chr203243012432430746E074-36393
chr203243075232430834E074-36305
chr203243084732431011E074-36128
chr203243102532431186E074-35953
chr203243404432434116E074-33023
chr203243415532434278E074-32861
chr203243428132434790E074-32349
chr203245036732451290E074-15849
chr203241748332417533E081-49606
chr203241762732418560E081-48579
chr203241957332419730E081-47409
chr203241980032420547E081-46592
chr203242067132420734E081-46405
chr203242082932420954E081-46185
chr203242104732421157E081-45982
chr203242119632421776E081-45363
chr203242699132427083E081-40056
chr203242713132427286E081-39853
chr203242737832427732E081-39407
chr203243012432430746E081-36393
chr203243075232430834E081-36305
chr203243084732431011E081-36128
chr203243102532431186E081-35953
chr203243147932431533E081-35606
chr203243153932432083E081-35056
chr203243222132432271E081-34868
chr203243262632432682E081-34457
chr203243280332432853E081-34286
chr203243339232433560E081-33579
chr203243356132433751E081-33388
chr203243376732433918E081-33221
chr203243404432434116E081-33023
chr203243415532434278E081-32861
chr203243428132434790E081-32349
chr203243479232435276E081-31863
chr203243527832435328E081-31811
chr203243584332435918E081-31221
chr203243599832436078E081-31061
chr203243620332436429E081-30710
chr203243647632436526E081-30613
chr203243665132436710E081-30429
chr203245391432453984E081-13155
chr203245434732454471E081-12668
chr203245461132455030E081-12109
chr203245512232455296E081-11843
chr203245539332455447E081-11692
chr203245882232458980E081-8159
chr203245931232459432E081-7707
chr203250553332505583E08138394
chr203250601332506112E08138874
chr203250618232506232E08139043
chr203241748332417533E082-49606
chr203241762732418560E082-48579
chr203241931532419380E082-47759
chr203242067132420734E082-46405
chr203242082932420954E082-46185
chr203242104732421157E082-45982
chr203242119632421776E082-45363
chr203242528932425644E082-41495
chr203242577332426324E082-40815
chr203242634432426375E082-40764
chr203242642832426780E082-40359
chr203242683832426928E082-40211
chr203242699132427083E082-40056
chr203242713132427286E082-39853
chr203242737832427732E082-39407
chr203242784332427912E082-39227
chr203242819632428246E082-38893
chr203242831832428427E082-38712
chr203242852132428834E082-38305
chr203242886232429297E082-37842
chr203242935632429664E082-37475
chr203242967432429820E082-37319
chr203243012432430746E082-36393
chr203243075232430834E082-36305
chr203243084732431011E082-36128
chr203243356132433751E082-33388
chr203243376732433918E082-33221
chr203243404432434116E082-33023
chr203243415532434278E082-32861
chr203243428132434790E082-32349
chr203245391432453984E082-13155
chr203245434732454471E082-12668
chr203245461132455030E082-12109
chr203245512232455296E082-11843
chr203245931232459432E082-7707
chr203245998132460049E082-7090