Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 20 | NC_000020.11:g.58144617C>A |
GRCh37.p13 chr 20 | NC_000020.10:g.56719673C>A |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
LOC107985434 transcript | XR_001754692.1:n. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.394 | A=0.606 |
1000Genomes | American | Sub | 694 | C=0.140 | A=0.860 |
1000Genomes | East Asian | Sub | 1008 | C=0.025 | A=0.975 |
1000Genomes | Europe | Sub | 1006 | C=0.086 | A=0.914 |
1000Genomes | Global | Study-wide | 5008 | C=0.159 | A=0.841 |
1000Genomes | South Asian | Sub | 978 | C=0.070 | A=0.930 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.089 | A=0.911 |
The Genome Aggregation Database | African | Sub | 8700 | C=0.333 | A=0.667 |
The Genome Aggregation Database | American | Sub | 838 | C=0.130 | A=0.870 |
The Genome Aggregation Database | East Asian | Sub | 1620 | C=0.030 | A=0.970 |
The Genome Aggregation Database | Europe | Sub | 18480 | C=0.079 | A=0.920 |
The Genome Aggregation Database | Global | Study-wide | 29940 | C=0.152 | A=0.848 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.090 | A=0.910 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.196 | A=0.803 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.078 | A=0.922 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs6128273 | 0.000802 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr20 | 56688561 | 56688694 | E067 | -30979 |
chr20 | 56688709 | 56688764 | E067 | -30909 |
chr20 | 56688793 | 56689263 | E067 | -30410 |
chr20 | 56716000 | 56716191 | E067 | -3482 |
chr20 | 56716381 | 56716500 | E067 | -3173 |
chr20 | 56716554 | 56716598 | E067 | -3075 |
chr20 | 56716739 | 56716841 | E067 | -2832 |
chr20 | 56717056 | 56717152 | E067 | -2521 |
chr20 | 56755303 | 56755353 | E067 | 35630 |
chr20 | 56755377 | 56755474 | E067 | 35704 |
chr20 | 56705094 | 56705218 | E068 | -14455 |
chr20 | 56716381 | 56716500 | E068 | -3173 |
chr20 | 56716554 | 56716598 | E068 | -3075 |
chr20 | 56689305 | 56689390 | E069 | -30283 |
chr20 | 56705668 | 56706105 | E069 | -13568 |
chr20 | 56715632 | 56715676 | E069 | -3997 |
chr20 | 56716000 | 56716191 | E069 | -3482 |
chr20 | 56716381 | 56716500 | E069 | -3173 |
chr20 | 56716554 | 56716598 | E069 | -3075 |
chr20 | 56716739 | 56716841 | E069 | -2832 |
chr20 | 56717056 | 56717152 | E069 | -2521 |
chr20 | 56686394 | 56686721 | E070 | -32952 |
chr20 | 56686756 | 56687828 | E070 | -31845 |
chr20 | 56688271 | 56688337 | E070 | -31336 |
chr20 | 56688561 | 56688694 | E070 | -30979 |
chr20 | 56688709 | 56688764 | E070 | -30909 |
chr20 | 56688793 | 56689263 | E070 | -30410 |
chr20 | 56689305 | 56689390 | E070 | -30283 |
chr20 | 56689440 | 56689530 | E070 | -30143 |
chr20 | 56704364 | 56704568 | E070 | -15105 |
chr20 | 56704747 | 56704986 | E070 | -14687 |
chr20 | 56705094 | 56705218 | E070 | -14455 |
chr20 | 56705280 | 56705431 | E070 | -14242 |
chr20 | 56705541 | 56705622 | E070 | -14051 |
chr20 | 56705668 | 56706105 | E070 | -13568 |
chr20 | 56706160 | 56708005 | E070 | -11668 |
chr20 | 56712052 | 56712441 | E070 | -7232 |
chr20 | 56724132 | 56724261 | E070 | 4459 |
chr20 | 56724290 | 56724614 | E070 | 4617 |
chr20 | 56724678 | 56724775 | E070 | 5005 |
chr20 | 56724867 | 56725041 | E070 | 5194 |
chr20 | 56702693 | 56703255 | E071 | -16418 |
chr20 | 56705668 | 56706105 | E071 | -13568 |
chr20 | 56709843 | 56710177 | E071 | -9496 |
chr20 | 56716000 | 56716191 | E071 | -3482 |
chr20 | 56716381 | 56716500 | E071 | -3173 |
chr20 | 56716554 | 56716598 | E071 | -3075 |
chr20 | 56716739 | 56716841 | E071 | -2832 |
chr20 | 56717056 | 56717152 | E071 | -2521 |
chr20 | 56716000 | 56716191 | E072 | -3482 |
chr20 | 56716381 | 56716500 | E072 | -3173 |
chr20 | 56716554 | 56716598 | E072 | -3075 |
chr20 | 56716739 | 56716841 | E072 | -2832 |
chr20 | 56717056 | 56717152 | E072 | -2521 |
chr20 | 56688561 | 56688694 | E073 | -30979 |
chr20 | 56688709 | 56688764 | E073 | -30909 |
chr20 | 56705280 | 56705431 | E073 | -14242 |
chr20 | 56705541 | 56705622 | E073 | -14051 |
chr20 | 56705668 | 56706105 | E073 | -13568 |
chr20 | 56706160 | 56708005 | E073 | -11668 |
chr20 | 56724867 | 56725041 | E073 | 5194 |
chr20 | 56753957 | 56754146 | E073 | 34284 |
chr20 | 56702693 | 56703255 | E074 | -16418 |
chr20 | 56703341 | 56703602 | E074 | -16071 |
chr20 | 56705094 | 56705218 | E074 | -14455 |
chr20 | 56705280 | 56705431 | E074 | -14242 |
chr20 | 56705541 | 56705622 | E074 | -14051 |
chr20 | 56705668 | 56706105 | E074 | -13568 |
chr20 | 56706160 | 56708005 | E074 | -11668 |
chr20 | 56715267 | 56715317 | E074 | -4356 |
chr20 | 56715632 | 56715676 | E074 | -3997 |
chr20 | 56716000 | 56716191 | E074 | -3482 |
chr20 | 56716381 | 56716500 | E074 | -3173 |
chr20 | 56716554 | 56716598 | E074 | -3075 |
chr20 | 56716739 | 56716841 | E074 | -2832 |
chr20 | 56717056 | 56717152 | E074 | -2521 |
chr20 | 56688561 | 56688694 | E081 | -30979 |
chr20 | 56688709 | 56688764 | E081 | -30909 |
chr20 | 56688793 | 56689263 | E081 | -30410 |
chr20 | 56689305 | 56689390 | E081 | -30283 |
chr20 | 56689440 | 56689530 | E081 | -30143 |
chr20 | 56704747 | 56704986 | E081 | -14687 |
chr20 | 56705094 | 56705218 | E081 | -14455 |
chr20 | 56705280 | 56705431 | E081 | -14242 |
chr20 | 56705541 | 56705622 | E081 | -14051 |
chr20 | 56705668 | 56706105 | E081 | -13568 |
chr20 | 56706160 | 56708005 | E081 | -11668 |
chr20 | 56710382 | 56711420 | E081 | -8253 |
chr20 | 56711456 | 56711663 | E081 | -8010 |
chr20 | 56711717 | 56711857 | E081 | -7816 |
chr20 | 56711886 | 56711972 | E081 | -7701 |
chr20 | 56712052 | 56712441 | E081 | -7232 |
chr20 | 56724132 | 56724261 | E081 | 4459 |
chr20 | 56724290 | 56724614 | E081 | 4617 |
chr20 | 56748349 | 56748430 | E081 | 28676 |
chr20 | 56748605 | 56748679 | E081 | 28932 |
chr20 | 56748710 | 56748966 | E081 | 29037 |
chr20 | 56749070 | 56749161 | E081 | 29397 |
chr20 | 56749170 | 56750557 | E081 | 29497 |
chr20 | 56751957 | 56752060 | E081 | 32284 |
chr20 | 56752085 | 56752195 | E081 | 32412 |
chr20 | 56752370 | 56752424 | E081 | 32697 |
chr20 | 56752474 | 56752650 | E081 | 32801 |
chr20 | 56688271 | 56688337 | E082 | -31336 |
chr20 | 56688561 | 56688694 | E082 | -30979 |
chr20 | 56688709 | 56688764 | E082 | -30909 |
chr20 | 56688793 | 56689263 | E082 | -30410 |
chr20 | 56689305 | 56689390 | E082 | -30283 |
chr20 | 56689440 | 56689530 | E082 | -30143 |
chr20 | 56705094 | 56705218 | E082 | -14455 |
chr20 | 56705280 | 56705431 | E082 | -14242 |
chr20 | 56706160 | 56708005 | E082 | -11668 |
chr20 | 56710382 | 56711420 | E082 | -8253 |
chr20 | 56711456 | 56711663 | E082 | -8010 |
chr20 | 56711717 | 56711857 | E082 | -7816 |
chr20 | 56711886 | 56711972 | E082 | -7701 |
chr20 | 56724132 | 56724261 | E082 | 4459 |
chr20 | 56724290 | 56724614 | E082 | 4617 |
chr20 | 56724678 | 56724775 | E082 | 5005 |
chr20 | 56724867 | 56725041 | E082 | 5194 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr20 | 56754170 | 56755075 | E067 | 34497 |
chr20 | 56754170 | 56755075 | E068 | 34497 |
chr20 | 56754170 | 56755075 | E069 | 34497 |
chr20 | 56754170 | 56755075 | E071 | 34497 |
chr20 | 56754170 | 56755075 | E072 | 34497 |
chr20 | 56754170 | 56755075 | E073 | 34497 |
chr20 | 56754170 | 56755075 | E074 | 34497 |
chr20 | 56754170 | 56755075 | E082 | 34497 |