SNP Detail Info-rs6138298

Organism: Homo sapiens

Alleles: C>A / C>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0294 (8814/29930,GnomAD)
A=0217 (6345/29118,TOPMED)
A=0260 (1304/5008,1000G)
A=0357 (1375/3854,ALSPAC)
A=0368 (1364/3708,TWINSUK)

Position: chr20:24447649 (GRCh38.p7) (20p11.21)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.952	A=0.048
1000Genomes	American	Sub	694	C=0.810	A=0.190
1000Genomes	East Asian	Sub	1008	C=0.584	A=0.416
1000Genomes	Europe	Sub	1006	C=0.589	A=0.411
1000Genomes	Global	Study-wide	5008	C=0.740	A=0.260
1000Genomes	South Asian	Sub	978	C=0.710	A=0.290
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.643	A=0.357
The Genome Aggregation Database	African	Sub	8726	C=0.911	A=0.089
The Genome Aggregation Database	American	Sub	834	C=0.810	A=0.190
The Genome Aggregation Database	East Asian	Sub	1618	C=0.544	A=0.456
The Genome Aggregation Database	Europe	Sub	18450	C=0.616	A=0.383
The Genome Aggregation Database	Global	Study-wide	29930	C=0.705	A=0.294
The Genome Aggregation Database	Other	Sub	302	C=0.790	A=0.210
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.782	A=0.217
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.632	A=0.368

PMID	Title	Author	Journal
24277619	ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.	Quillen EE	Am J Med Genet B Neuropsychiatr Genet

SNP ID	p-value	Traits	Study
rs6138298	0.00024	alcohol consumption (maxi-drinks)	24277619

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs6138298