SNP Detail Info-rs6139415

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0104 (3139/29968,GnomAD)
G=0093 (2714/29118,TOPMED)
G=0137 (684/5008,1000G)
G=0091 (352/3854,ALSPAC)
G=0091 (337/3708,TWINSUK)

Position: chr20:4398224 (GRCh38.p7) (20p13)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 20	NC_000020.11:g.4398224A>G
GRCh37.p13 chr 20	NC_000020.10:g.4378871A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.952	G=0.048
1000Genomes	American	Sub	694	A=0.860	G=0.140
1000Genomes	East Asian	Sub	1008	A=0.783	G=0.217
1000Genomes	Europe	Sub	1006	A=0.903	G=0.097
1000Genomes	Global	Study-wide	5008	A=0.863	G=0.137
1000Genomes	South Asian	Sub	978	A=0.790	G=0.210
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.909	G=0.091
The Genome Aggregation Database	African	Sub	8720	A=0.932	G=0.068
The Genome Aggregation Database	American	Sub	838	A=0.850	G=0.150
The Genome Aggregation Database	East Asian	Sub	1616	A=0.738	G=0.262
The Genome Aggregation Database	Europe	Sub	18494	A=0.894	G=0.105
The Genome Aggregation Database	Global	Study-wide	29968	A=0.895	G=0.104
The Genome Aggregation Database	Other	Sub	300	A=0.860	G=0.140
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.906	G=0.093
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.909	G=0.091

PMID	Title	Author	Journal
21703634	A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence.	Wang KS	J Psychiatr Res

SNP ID	p-value	Traits	Study
rs6139415	2.94E-05	alcohol dependence	21703634

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs6139415